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2019 Journal Article Diverse commensal Escherichia coli clones and plasmids disseminate antimicrobial resistance genes in domestic animals and children in a semirural community in EcuadorSalinas, Liseth, Cardenas, Paul, Johnson, Timothy J., Vasco, Karla, Graham, Jay and Trueba, Gabriel (2019). Diverse commensal Escherichia coli clones and plasmids disseminate antimicrobial resistance genes in domestic animals and children in a semirural community in Ecuador. mSphere, 4 (3) e00316-19, 1-10. doi: 10.1128/mSphere.00316-19 |
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2019 Journal Article Assessing transmission of antimicrobial-resistant Escherichia coli in wild giraffe contact networksMiller, Elizabeth A., Johnson, Timothy J., Omondi, George, Atwill, Edward R., Isbell, Lynne A., McCowan, Brenda and VanderWaal, Kimberly (2019). Assessing transmission of antimicrobial-resistant Escherichia coli in wild giraffe contact networks. Applied and Environmental Microbiology, 85 (1) e02136-18, 1-15. doi: 10.1128/AEM.02136-18 |
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2019 Journal Article Phylogenomic analysis of extraintestinal pathogenic Escherichia coli sequence type 1193, an emerging multidrug-resistant clonal groupJohnson, Timothy J., Elnekave, Ehud, Miller, Elizabeth A., Munoz-Aguayo, Jeannette, Figueroa, Cristian Flores, Johnston, Brian, Nielson, Daniel W., Logue, Catherine M. and Johnson, James R. (2019). Phylogenomic analysis of extraintestinal pathogenic Escherichia coli sequence type 1193, an emerging multidrug-resistant clonal group. Antimicrobial Agents and Chemotherapy, 63 (1) e01913-18, 1-15. doi: 10.1128/AAC.01913-18 |
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2019 Journal Article Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community compositionFountain-Jones, Nicholas M., Clark, Nicholas J., Kinsley, Amy C., Carstensen, Michelle, Forester, James, Johnson, Timothy J., Miller, Elizabeth A., Moore, Seth, Wolf, Tiffany M. and Craft, Meggan E. (2019). Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community composition. Journal of Animal Ecology, 89 (3) 1365-2656.13154, 1-12. doi: 10.1111/1365-2656.13154 |
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2018 Journal Article YraP Contributes to Cell Envelope Integrity and Virulence of Salmonella enterica Serovar TyphimuriumMorris, Faye C., Wells, Timothy J., Bryant, Jack A., Schager, Anna E., Sevastsyanovich, Yanina R., Squire, Derrick J. P., Marshall, Jennifer, Isom, Georgia L., Rooke, Jessica, Maderbocus, Riyaz, Knowles, Timothy J., Overduin, Michael, Rossiter, Amanda E., Cunningham, Adam F. and Henderson, Ian R. (2018). YraP Contributes to Cell Envelope Integrity and Virulence of Salmonella enterica Serovar Typhimurium. Infection and Immunity, 86 (11) e00829-17. doi: 10.1128/IAI.00829-17 |
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2018 Journal Article A novel method of serum resistance by Escherichia coli that causes urosepsisCoggon, Carrie F., Jiang, Andrew, Goh, Kelvin G. K., Henderson, Ian R., Schembri, Mark A. and Wells, Timothy J. (2018). A novel method of serum resistance by Escherichia coli that causes urosepsis. mBio, 9 (3) e00920-18, e00920-18. doi: 10.1128/mbio.00920-18 |
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2018 Journal Article Role of a single noncoding nucleotide in the evolution of an epidemic African clade of SalmonellaHammarlof, Disa L., Kroger, Carsten, Owen, Sian V., Canals, Rocio, Lacharme-Lora, Lizeth, Wenner, Nicolas, Schager, Anna E., Wells, Timothy J., Henderson, Ian R., Wigley, Paul, Hokamp, Karsten, Feasey, Nicholas A., Gordon, Melita A. and Hinton, Jay C. D. (2018). Role of a single noncoding nucleotide in the evolution of an epidemic African clade of Salmonella. Proceedings of the National Academy of Sciences of the United States of America, 115 (11), E2614-E2623. doi: 10.1073/pnas.1714718115 |
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2017 Journal Article Antigen localization influences the magnitude and kinetics of endogenous adaptive immune response to recombinant Salmonella vaccinesSevastsyanovich, Yanina R., Withers, David R., Marriott, Claire L., Morris, Faye C., Wells, Timothy J., Browning, Douglas F., Beriotto, Irene, Ross, Ewan, Ali, Hossam Omar, Wardius, Catherine A., Cunningham, Adam F., Henderson, Ian R. and Rossiter, Amanda E. (2017). Antigen localization influences the magnitude and kinetics of endogenous adaptive immune response to recombinant Salmonella vaccines. Infection and Immunity, 85 (12) e00593-17, e00593-17. doi: 10.1128/iai.00593-17 |
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2017 Journal Article Inactivation of Transcriptional Regulators during Within-Household Evolution of <i>Escherichia coli</i>Kisiela, Dagmara I., Radey, Matthew, Paul, Sandip, Porter, Stephen, Polukhina, Kseniya, Tchesnokova, Veronika, Shevchenko, Sofiya, Chan, Diana, Aziz, Maliha, Johnson, Timothy J., Price, Lance B., Johnson, James R. and Sokurenko, Evgeni V. (2017). Inactivation of Transcriptional Regulators during Within-Household Evolution of Escherichia coli. Journal of Bacteriology, 199 (13) e00036. doi: 10.1128/JB.00036-17 |
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2017 Conference Publication Chlamydia-Infected Macrophages: "Trojan Horses" for Dissemination of IL-23 and TNF-Mediated Inflammation in SKG Mouse Reactive ArthritisBaillet, Athan, Bhuyan, Zaied Ahmed, Douillard, Claire, Bozon, Aurelie, Armitage, Charles, Romand, Xavier, Minh Vu Chuong Nguyen,, Favier, Bertrand, Wells, Timothy, Beagley, Kenneth and Thomas, Ranjeny (2017). Chlamydia-Infected Macrophages: "Trojan Horses" for Dissemination of IL-23 and TNF-Mediated Inflammation in SKG Mouse Reactive Arthritis. 2017 ACR/ARHP Pediatric Rheumatology Symposium, San Diego, CA, United States, 3-8 November 2017. Hoboken, NJ, United States: John Wiley & Sons. |
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2016 Journal Article Captivity humanizes the primate microbiomeClayton, Jonathan B., Vangay, Pajau, Hu Huang, , Ward, Tonya, Hillmann, Benjamin M., Al-Ghalith, Gabriel A., Travis, Dominic A., Ha Thang Long, , Bui Van Tuan, , Vo Van Minh, , Cabana, Francis, Nadler, Tilo, Toddes, Barbara, Murphy, Tami, Glander, Kenneth E., Johnson, Timothy J. and Knights, Dan (2016). Captivity humanizes the primate microbiome. Proceedings of the National Academy of Sciences of the United States of America, 113 (37), 10376-10381. doi: 10.1073/pnas.1521835113 |
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2016 Journal Article Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studiesGohl, Daryl M., Vangay, Pajau, Garbe, John, MacLean, Allison, Hauge, Adam, Becker, Aaron, Gould, Trevor J., Clayton, Jonathan B., Johnson, Timothy J., Hunter, Ryan, Knights, Dan and Beckman, Kenneth B. (2016). Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies. Nature Biotechnology, 34 (9), 942-+. doi: 10.1038/nbt.3601 |
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2016 Journal Article Evolutionary History of the Global Emergence of the <i>Escherichia coli</i> Epidemic Clone ST131Stoesser, Nicole, Sheppard, Anna E., Pankhurst, Louise, De Maio, Nicola, Moore, Catrin E., Sebra, Robert, Turner, Paul, Anson, Luke W., Kasarskis, Andrew, Batty, Elizabeth M., Kos, Veronica, Wilson, Daniel J., Phetsouvanh, Rattanaphone, Wyllie, David, Sokurenko, Evgeni, Manges, Amee R., Johnson, Timothy J., Price, Lance B., Peto, Timothy E. A., Johnson, James R., Didelot, Xavier, Walker, A. Sarah and Crook, Derrick W. (2016). Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131. Mbio, 7 (2) e02162-15. doi: 10.1128/mBio.02162-15 |
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2015 Journal Article Cross-species chimeras reveal BamA POTRA and β-barrel domains must be fine-tuned for efficient OMP insertionBrowning, Douglas F., Bavro, Vassiliy N., Mason, Jessica L., Sevastsyanovich, Yanina R., Rossiter, Amanda E., Jeeves, Mark, Wells, Timothy J., Knowles, Timothy J., Cunningham, Adam F., Donald, James W., Palmer, Tracy, Overduin, Michael and Henderson, Ian R. (2015). Cross-species chimeras reveal BamA POTRA and β-barrel domains must be fine-tuned for efficient OMP insertion. Molecular Microbiology, 97 (4), 646-659. doi: 10.1111/mmi.13052 |
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2014 Journal Article Increased severity of respiratory infections associated with elevated anti-LPS IgG2 which inhibits serum bactericidal killingWells, Timothy J., Whitters, Deborah, Sevastsyanovich, Yanina R., Heath, Jennifer N., Pravin, John, Goodall, Margaret, Browning, Douglas F., O'Shea, Matthew K., Cranston, Amy, De Soyza, Anthony, Cunningham, Adam F., MacLennan, Calman A., Henderson, Ian R. and Stockley, Robert A. (2014). Increased severity of respiratory infections associated with elevated anti-LPS IgG2 which inhibits serum bactericidal killing. Journal of Experimental Medicine, 211 (9), 1893-1904. doi: 10.1084/jem.20132444 |
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2014 Journal Article Effects of tylosin administration on C-reactive protein concentration and carriage of <i>Salmonella enterica</i> in pigsKim, Hyeun Bum, Singer, Randall S., Borewicz, Klaudyna, White, Bryan A., Sreevatsan, Srinand, Johnson, Timothy J., Espejo, Luis A. and Isaacson, Richard E. (2014). Effects of tylosin administration on C-reactive protein concentration and carriage of Salmonella enterica in pigs. American Journal of Veterinary Research, 75 (5), 460-467. doi: 10.2460/ajvr.75.5.460 |
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2013 Journal Article Mutational and topological analysis of the Escherichia coli BamA proteinBrowning, Douglas F., Matthews, Sophie A., Rossiter, Amanda E., Sevastsyanovich, Yanina R., Jeeves, Mark, Mason, Jessica L., Wells, Timothy J., Wardius, Catherine A., Knowles, Timothy J., Cunningham, Adam F., Bavro, Vassiliy N., Overduin, Michael and Henderson, Ian R. (2013). Mutational and topological analysis of the Escherichia coli BamA protein. PLoS ONE, 8 (12) e84512, e84512. doi: 10.1371/journal.pone.0084512 |
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2013 Journal Article Genotypic and phenotypic characterisation of enteroaggregative Escherichia coli from children in Rio de Janeiro, BrazilFranca, Fernanda L. S., Wells, Timothy J., Browning, Douglas F., Nogueira, Raquel Tayar, Sarges, Felipe Silva, Pereira, Ana Claudia, Cunningham, Adam F., Lucheze, Kely, Paula Rosa, Ana Claudia, Henderson, Ian R. and de Luna, Maria das Gracas (2013). Genotypic and phenotypic characterisation of enteroaggregative Escherichia coli from children in Rio de Janeiro, Brazil. PLoS ONE, 8 (7) e69971, e69971. doi: 10.1371/journal.pone.0069971 |
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2013 Journal Article Laboratory adapted Escherichia coli K-12 becomes a pathogen of Caenorhabditis elegans upon restoration of O antigen biosynthesisBrowning, Douglas F., Wells, Timothy J., Franca, Fernanda L. S., Morris, Faye C., Sevastsyanovich, Yanina R., Bryant, Jack A., Johnson, Matthew D., Lund, Peter A., Cunningham, Adam F., Hobman, Jon L., May, Robin C., Webber, Mark A. and Henderson, Ian R. (2013). Laboratory adapted Escherichia coli K-12 becomes a pathogen of Caenorhabditis elegans upon restoration of O antigen biosynthesis. Molecular Microbiology, 87 (5), 939-950. doi: 10.1111/mmi.12144 |
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2013 Book Chapter Type 1 and 5 secretion systems and associated toxinsWells, Timothy J. and Henderson, Ian R. (2013). Type 1 and 5 secretion systems and associated toxins. Escherichia coli: pathotypes and principles of pathogenesis. (pp. 499-532) edited by Michael S. Donnenberg. Cambridge, MA, United States: Academic Press. doi: 10.1016/B978-0-12-397048-0.00016-4 |
