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2020 Journal Article Genomic landscape of multi-drug resistant avian pathogenic Escherichia coli recovered from broilersAzam, Mariya, Mohsin, Mashkoor, Johnson, Timothy J., Smith, Emily A., Johnson, Abigail, Umair, Muhammad, Saleemi, Muhammad Kashif and Sajjad-ur-Rahman, (2020). Genomic landscape of multi-drug resistant avian pathogenic Escherichia coli recovered from broilers. Veterinary Microbiology, 247 108766, 1-7. doi: 10.1016/j.vetmic.2020.108766 |
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2020 Journal Article Chicken intestinal mycobiome: initial characterization and its response to bacitracin methylene disalicylateRobinson, Kelsy, Xiao, Yingping, Johnson, Timothy J., Chen, Binlong, Yang, Qing, Lyu, Wentao, Wang, Jing, Fansler, Nicole, Becker, Sage, Liu, Jing, Yang, Hua and Zhang, Guolong (2020). Chicken intestinal mycobiome: initial characterization and its response to bacitracin methylene disalicylate. Applied and Environmental Microbiology, 86 (13) e00304-20, 1-15. doi: 10.1128/AEM.00304-20 |
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2020 Journal Article Respiratory and gut microbiota in commercial turkey flocks with disparate weight gain trajectories display differential compositional dynamicsTaylor, Kara J. M., Ngunjiri, John M., Abundo, Michael C., Jang, Hyesun, Elaish, Mohamed, Ghorbani, Amir, Mahesh, K. C., Weber, Bonnie P., Johnson, Timothy J. and Lee, Chang-Won (2020). Respiratory and gut microbiota in commercial turkey flocks with disparate weight gain trajectories display differential compositional dynamics. Applied and Environmental Microbiology, 86 (12) e00431-20, 1-18. doi: 10.1128/AEM.00431-20 |
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2020 Journal Article Characterization of antimicrobial resistance genes in Enterobacteriaceae carried by suburban mesocarnivores and locally owned and stray dogsWorsley-Tonks, Katherine E. L., Miller, Elizabeth A., Gehrt, Stanley D., McKenzie, Shane C., Travis, Dominic A., Johnson, Timothy J. and Craft, Meggan E. (2020). Characterization of antimicrobial resistance genes in Enterobacteriaceae carried by suburban mesocarnivores and locally owned and stray dogs. Zoonoses and Public Health, 67 (4), 460-466. doi: 10.1111/zph.12691 |
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2020 Journal Article Genomic landscape of Ornithobacterium rhinotracheale in commercial turkey production in the United StatesSmith, Emily A., Miller, Elizabeth A., Weber, Bonnie P., Aguayo, Jeannette Munoz, Figueroa, Cristian Flores, Huisinga, Jared, Nezworski, Jill, Kromm, Michelle, Wileman, Ben and Johnson, Timothy J. (2020). Genomic landscape of Ornithobacterium rhinotracheale in commercial turkey production in the United States. Applied and Environmental Microbiology, 86 (11) e02874-19, 1-9. doi: 10.1128/AEM.02874-19 |
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2020 Conference Publication A Novel Pseudomonas aeruginosa Virulence Factor Predicts CLAD and Death after Lung TransplantationDivithotawela, C., Pham, A., Ledger, E. L., Hopkins, P., Tan, M., Yerkovich, S., Wells, T. J. and Chambers, D. C. (2020). A Novel Pseudomonas aeruginosa Virulence Factor Predicts CLAD and Death after Lung Transplantation. 40th Annual Meeting and Scientific Sessions of the International Society for Heart and Lung Transplantation (ISHLT), Montreal, Canada, 22-25 April 2020. New York, NY United States: Elsevier. |
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2020 Conference Publication A Novel Pseudomonas aeruginosa Virulence Factor Predicts CLAD and Death after Lung TransplantationDivithotawela, C., Pham, A., Ledger, E. L., Hopkins, P., Tan, M., Yerkovich, S., Wells, T. J. and Chambers, D. C. (2020). A Novel Pseudomonas aeruginosa Virulence Factor Predicts CLAD and Death after Lung Transplantation. International Society for Heart and Lung Transplantation 40th Annual Meeting and Scientific Sessions, Online, 22 - 25 April 2020. Philadelphia, PA United States: Elsevier. doi: 10.1016/j.healun.2020.01.1265 |
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2020 Journal Article Prevalence and trend analysis of antimicrobial resistance in clinical Escherichia coli isolates collected from diseased pigs in the USA between 2006 and 2016Hayer, Shivdeep Singh, Rovira, Albert, Olsen, Karen, Johnson, Timothy J., Vannucci, Fabio, Rendahl, Aaron, Perez, Andres and Alvarez, Julio (2020). Prevalence and trend analysis of antimicrobial resistance in clinical Escherichia coli isolates collected from diseased pigs in the USA between 2006 and 2016. Transboundary and Emerging Diseases, 67 (5), 1930-1941. doi: 10.1111/tbed.13528 |
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2020 Journal Article Treatment of life-threatening Pseudomonas aeruginosa infection by pheresis of inhibitory antibodiesDivithotawela, Chandima, Pham, Amy, Ledger, Emma L., Hopkins, Peter, Wells, Timothy J. and Chambers, Daniel (2020). Treatment of life-threatening Pseudomonas aeruginosa infection by pheresis of inhibitory antibodies. Journal of Heart and Lung Transplantation, 39 (1), 87-89. doi: 10.1016/j.healun.2019.10.001 |
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2019 Journal Article Bacterial flagellin promotes viral entry via an NF-kB and Toll Like Receptor 5 dependent pathwayBenedikz, Elizabeth K., Bailey, Dalan, Cook, Charlotte N. L., Gonçalves-Carneiro, Daniel, Buckner, Michelle M. C., Blair, Jessica M. A., Wells, Timothy J., Fletcher, Nicola F., Goodall, Margaret, Flores-Langarica, Adriana, Kingsley, Robert A., Madsen, Jens, Teeling, Jessica, Johnston, Sebastian L., MacLennan, Calman A., Balfe, Peter, Henderson, Ian R., Piddock, Laura J. V., Cunningham, Adam F. and McKeating, Jane A. (2019). Bacterial flagellin promotes viral entry via an NF-kB and Toll Like Receptor 5 dependent pathway. Scientific Reports, 9 (1) 7903. doi: 10.1038/s41598-019-44263-7 |
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2019 Journal Article Antibiotics and host-tailored probiotics similarly modulate effects on the developing avian microbiome, mycobiome, and host gene expressionWard, Tonya L., Weber, Bonnie P., Mendoza, Kristelle M., Danzeisen, Jessica L., Llop, Katharine, Lang, Kevin, Clayton, Jonathan B., Grace, Elicia, Brannon, Jeanine, Radovic, Igor, Beauclaire, Mai, Heisel, Timothy J., Knights, Dan, Cardona, Carol, Kogut, Mike, Johnson, Casey, Noll, Sally L., Arsenault, Ryan, Reed, Kent M. and Johnson, Timothy J. (2019). Antibiotics and host-tailored probiotics similarly modulate effects on the developing avian microbiome, mycobiome, and host gene expression. mBio, 10 (5) e02171-19, 1-17. doi: 10.1128/mBio.02171-19 |
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2019 Journal Article Bacterial community structure and function distinguish gut sites in captive red-shanked doucs (Pygathrix nemaeus)Clayton, Jonathan B., Shields-Cutler, Robin R., Hoops, Susan L., Al-Ghalith, Gabriel A., Sha, John C. M., Johnson, Timothy J. and Knights, Dan (2019). Bacterial community structure and function distinguish gut sites in captive red-shanked doucs (Pygathrix nemaeus). American Journal of Primatology, 81 (10-11), 1-15. doi: 10.1002/ajp.22977 |
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2019 Journal Article Diverse commensal Escherichia coli clones and plasmids disseminate antimicrobial resistance genes in domestic animals and children in a semirural community in EcuadorSalinas, Liseth, Cardenas, Paul, Johnson, Timothy J., Vasco, Karla, Graham, Jay and Trueba, Gabriel (2019). Diverse commensal Escherichia coli clones and plasmids disseminate antimicrobial resistance genes in domestic animals and children in a semirural community in Ecuador. mSphere, 4 (3) e00316-19, 1-10. doi: 10.1128/mSphere.00316-19 |
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2019 Journal Article Phylogenomic analysis of extraintestinal pathogenic Escherichia coli sequence type 1193, an emerging multidrug-resistant clonal groupJohnson, Timothy J., Elnekave, Ehud, Miller, Elizabeth A., Munoz-Aguayo, Jeannette, Figueroa, Cristian Flores, Johnston, Brian, Nielson, Daniel W., Logue, Catherine M. and Johnson, James R. (2019). Phylogenomic analysis of extraintestinal pathogenic Escherichia coli sequence type 1193, an emerging multidrug-resistant clonal group. Antimicrobial Agents and Chemotherapy, 63 (1) e01913-18, 1-15. doi: 10.1128/AAC.01913-18 |
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2019 Journal Article Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community compositionFountain-Jones, Nicholas M., Clark, Nicholas J., Kinsley, Amy C., Carstensen, Michelle, Forester, James, Johnson, Timothy J., Miller, Elizabeth A., Moore, Seth, Wolf, Tiffany M. and Craft, Meggan E. (2019). Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community composition. Journal of Animal Ecology, 89 (3) 1365-2656.13154, 1-12. doi: 10.1111/1365-2656.13154 |
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2019 Journal Article Assessing transmission of antimicrobial-resistant Escherichia coli in wild giraffe contact networksMiller, Elizabeth A., Johnson, Timothy J., Omondi, George, Atwill, Edward R., Isbell, Lynne A., McCowan, Brenda and VanderWaal, Kimberly (2019). Assessing transmission of antimicrobial-resistant Escherichia coli in wild giraffe contact networks. Applied and Environmental Microbiology, 85 (1) e02136-18, 1-15. doi: 10.1128/AEM.02136-18 |
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2018 Journal Article YraP Contributes to Cell Envelope Integrity and Virulence of Salmonella enterica Serovar TyphimuriumMorris, Faye C., Wells, Timothy J., Bryant, Jack A., Schager, Anna E., Sevastsyanovich, Yanina R., Squire, Derrick J. P., Marshall, Jennifer, Isom, Georgia L., Rooke, Jessica, Maderbocus, Riyaz, Knowles, Timothy J., Overduin, Michael, Rossiter, Amanda E., Cunningham, Adam F. and Henderson, Ian R. (2018). YraP Contributes to Cell Envelope Integrity and Virulence of Salmonella enterica Serovar Typhimurium. Infection and Immunity, 86 (11) e00829-17. doi: 10.1128/IAI.00829-17 |
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2018 Journal Article A novel method of serum resistance by Escherichia coli that causes urosepsisCoggon, Carrie F., Jiang, Andrew, Goh, Kelvin G. K., Henderson, Ian R., Schembri, Mark A. and Wells, Timothy J. (2018). A novel method of serum resistance by Escherichia coli that causes urosepsis. mBio, 9 (3) e00920-18, e00920-18. doi: 10.1128/mbio.00920-18 |
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2018 Journal Article Role of a single noncoding nucleotide in the evolution of an epidemic African clade of SalmonellaHammarlof, Disa L., Kroger, Carsten, Owen, Sian V., Canals, Rocio, Lacharme-Lora, Lizeth, Wenner, Nicolas, Schager, Anna E., Wells, Timothy J., Henderson, Ian R., Wigley, Paul, Hokamp, Karsten, Feasey, Nicholas A., Gordon, Melita A. and Hinton, Jay C. D. (2018). Role of a single noncoding nucleotide in the evolution of an epidemic African clade of Salmonella. Proceedings of the National Academy of Sciences of the United States of America, 115 (11), E2614-E2623. doi: 10.1073/pnas.1714718115 |
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2017 Journal Article Antigen localization influences the magnitude and kinetics of endogenous adaptive immune response to recombinant Salmonella vaccinesSevastsyanovich, Yanina R., Withers, David R., Marriott, Claire L., Morris, Faye C., Wells, Timothy J., Browning, Douglas F., Beriotto, Irene, Ross, Ewan, Ali, Hossam Omar, Wardius, Catherine A., Cunningham, Adam F., Henderson, Ian R. and Rossiter, Amanda E. (2017). Antigen localization influences the magnitude and kinetics of endogenous adaptive immune response to recombinant Salmonella vaccines. Infection and Immunity, 85 (12) e00593-17, e00593-17. doi: 10.1128/iai.00593-17 |
