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2025 Journal Article Dual-Contrast Agent with Nanoparticle and Molecular Components in Photon-Counting Computed Tomography: Assessing Articular Cartilage HealthPaakkari, Petri, Inkinen, Satu I., Jäntti, Jiri, Tuppurainen, Juuso, Fugazzola, Maria C., Joenathan, Anisha, Ylisiurua, Sampo, Nieminen, Miika T., Kröger, Heikki, Mikkonen, Santtu, van Weeren, René, Snyder, Brian D., Töyräs, Juha, Honkanen, Miitu K. M., Matikka, Hanna, Grinstaff, Mark W., Honkanen, Juuso T. J. and Mäkelä, Janne T. A. (2025). Dual-Contrast Agent with Nanoparticle and Molecular Components in Photon-Counting Computed Tomography: Assessing Articular Cartilage Health. Annals of Biomedical Engineering, 1-16. doi: 10.1007/s10439-025-03715-0 |
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2025 Journal Article Machine learning approaches for the fusion of near-infrared, mid-infrared, and Raman data to identify cartilage degradation in human osteochondral plugsTafintseva, Valeria, Nippolainen, Ervin, Virtanen, Vesa, Solheim, Johanne Heitmann, Zimmermann, Boris, Saarakkala, Simo, Kröger, Heikki, Kohler, Achim, Töyräs, Juha, Afara, Isaac O. and Shaikh, Rubina (2025). Machine learning approaches for the fusion of near-infrared, mid-infrared, and Raman data to identify cartilage degradation in human osteochondral plugs. Applied Spectroscopy, 79 (3), 385-395. doi: 10.1177/00037028241285583 |
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2025 Conference Publication Heart rate variability: an early biomarker of cystic fibrosis exacerbationMattison, G., Dobbins, C., Smith, D., Reid, D., Canfell, O., Sullivan, C., Toyras, J., Okano, S., Pelecanos, A., Hartel, G. and Forrester, D. (2025). Heart rate variability: an early biomarker of cystic fibrosis exacerbation. TSANZSRS Annual Scientific meeting 2025, Adelaide, SA, Australia, 21-25 March 2025. Richmond, VIC, Australia: John Wiley & Sons. doi: 10.1111/imj.70003 |
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2025 Journal Article Hybrid discrete and finite element analysis enables fast evaluation of hip joint cartilage mechanical responseVenäläinen, Mikko S., Li, Mao, Töyräs, Juha, Korhonen, Rami K., Fripp, Jurgen, Crozier, Stuart, Chandra, Shekhar S. and Engstrom, Craig (2025). Hybrid discrete and finite element analysis enables fast evaluation of hip joint cartilage mechanical response. Journal of Biomechanics, 182 112568, 1-6. doi: 10.1016/j.jbiomech.2025.112568 |
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2025 Journal Article Community prevalence of positional obstructive sleep apneaDuce, Brett L., Kulkas, Antti E., Leppänen, Timo T., Oksenberg, Arie, Töyräs, Juha and Hukins, Craig A. (2025). Community prevalence of positional obstructive sleep apnea. Journal of Clinical Sleep Medicine, 21 (5), 875-882. doi: 10.5664/jcsm.11584 |
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2025 Journal Article Arousal burden is highest in supine sleeping position and during light sleepPitkänen, Minna, Huovinen, Juho, Rissanen, Marika, Pitkänen, Henna, Kainulainen, Samu, Penzel, Thomas, Fanfulla, Francesco, Anttalainen, Ulla, Saaresranta, Tarja, Grote, Ludger, Hedner, Jan, Staats, Richard, Duce, Brett, Töyräs, Juha, Oksenberg, Arie and Leppänen, Timo (2025). Arousal burden is highest in supine sleeping position and during light sleep. Journal of Clinical Sleep Medicine, 21 (2), 337-344. doi: 10.5664/jcsm.11398 |
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2025 Journal Article The Relationship Between the Optical Properties of Articular Cartilage and the Biomechanical Parameters of the TissueKafian-Attari, Iman, Ebrahimi, Mohammad, Nippolainen, Ervin, Mirhashemi, Arash, Paakkari, Petri, Bergmann, Florian, Foschum, Florian, Kienle, Alwin, Toyras, Juha and Afara, Isaac (2025). The Relationship Between the Optical Properties of Articular Cartilage and the Biomechanical Parameters of the Tissue. Journal of Biophotonics, 18 (4) e202400460. doi: 10.1002/jbio.202400460 |
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2024 Journal Article Nocturnal short-term HRV reflects impaired daytime vigilance better than overnight HRV in suspected OSA patientsHietakoste, Salla, Karhu, Tuomas, Lombardi, Carolina, Armañac-Julián, Pablo, Bailón, Raquel, Duce, Brett, Sillanmäki, Saara, Töyräs, Juha, Leppänen, Timo, Myllymaa, Sami and Kainulainen, Samu (2024). Nocturnal short-term HRV reflects impaired daytime vigilance better than overnight HRV in suspected OSA patients. Sleep, 48 (4) zsae282. doi: 10.1093/sleep/zsae282 |
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2024 Journal Article Photon-counting in dual-contrast-enhanced computed tomography: a proof-of-concept quantitative biomechanical assessment of articular cartilagePaakkari, Petri, Inkinen, Satu I., Mohammadi, Ali, Nieminen, Miika T., Joenathan, Anisha, Grinstaff, Mark W., Töyräs, Juha, Mäkelä, Janne T. A. and Honkanen, Juuso T. J. (2024). Photon-counting in dual-contrast-enhanced computed tomography: a proof-of-concept quantitative biomechanical assessment of articular cartilage. Scientific Reports, 14 (1) 29956, 1-14. doi: 10.1038/s41598-024-78237-1 |
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2024 Journal Article The human patellar tendon is mechanically homogenous at its mid-substanceKositsky, Adam, Stenroth, Lauri, Nippolainen, Ervin, Torniainen, Jari, Mäkelä, Janne T.A., Paakkari, Petri, Paakkonen, Tommi, Kröger, Heikki, Töyräs, Juha, Afara, Isaac O. and Korhonen, Rami K. (2024). The human patellar tendon is mechanically homogenous at its mid-substance. Journal of the Mechanical Behavior of Biomedical Materials, 163 106875, 106875. doi: 10.1016/j.jmbbm.2024.106875 |
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2024 Journal Article Temporal and sleep stage‐dependent agreement in manual scoring of respiratory eventsPitkänen, Minna, Pitkänen, Henna, Nath, Rajdeep Kumar, Nikkonen, Sami, Kainulainen, Samu, Korkalainen, Henri, Ólafsdóttir, Kristín Anna, Arnardottir, Erna Sif, Sigurdardottir, Sigridur, Penzel, Thomas, Fanfulla, Francesco, Anttalainen, Ulla, Saaresranta, Tarja, Grote, Ludger, Hedner, Jan, Staats, Richard, Töyräs, Juha and Leppänen, Timo (2024). Temporal and sleep stage‐dependent agreement in manual scoring of respiratory events. Journal of Sleep Research, e14391. doi: 10.1111/jsr.14391 |
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2024 Conference Publication Worsening hypoxic load impairs cardiorespiratory couplingHietakoste, Salla, Armañac-Julián, Pablo, Karhu, Tuomas, Bailón, Raquel, Sillanmäki, Saara, Töyräs, Juha, Leppänen, Timo, Myllymaa, Sami and Kainulainen, Samu (2024). Worsening hypoxic load impairs cardiorespiratory coupling. 2024 13th Conference of the European Study Group on Cardiovascular Oscillations: Physiologically-Guided Signal Processing of Cardiovascular and Cerebrovascular Oscillations, ESGCO 2024, Zaragoza, Spain, 23-25 October 2024. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/esgco63003.2024.10767029 |
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2024 Journal Article Retrospective validation of automatic sleep analysis with grey areas model for human‐in‐the‐loop scoring approachRusanen, Matias, Jouan, Gabriel, Huttunen, Riku, Nikkonen, Sami, Sigurðardóttir, Sigríður, Töyräs, Juha, Duce, Brett, Myllymaa, Sami, Arnardottir, Erna Sif, Leppänen, Timo, Islind, Anna Sigridur, Kainulainen, Samu and Korkalainen, Henri (2024). Retrospective validation of automatic sleep analysis with grey areas model for human‐in‐the‐loop scoring approach. Journal of Sleep Research, e14362. doi: 10.1111/jsr.14362 |
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2024 Conference Publication Ventilatory burden predicts change in self‑reported sleepiness following continuous positive airway pressure treatment in obstructive sleep apnoeaStaykov, E., Mann, D., Duce, B., Kainulainen, S., Leppänen, T., Töyräs, J., Azarbarzin, A., Sands, S. and Terrill, P. (2024). Ventilatory burden predicts change in self‑reported sleepiness following continuous positive airway pressure treatment in obstructive sleep apnoea. 2024 Australasian Sleep Association, Gold Coast, QLD Australia, 16-19 October 2024. Oxford, United Kingdom: Oxford University Press. doi: 10.1093/sleepadvances/zpae070.090 |
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2024 Conference Publication O004 Incorporating Arousals into Sleep vs. Wakefulness Classification Outperforms Traditional Binary Classification at 1-Second Epoch ResolutionSomaskandhan, P., Korkalainen, H., Leppänen, T., Töyräs, J., Melehan, K., Wilson, D., Ruehland, W., Mann, D. and Terrill, P. (2024). O004 Incorporating Arousals into Sleep vs. Wakefulness Classification Outperforms Traditional Binary Classification at 1-Second Epoch Resolution. Sleep DownUnder 2024, Gold Coast, QLD Australia, 16-19 October 2024. Oxford, United Kingdom: Oxford University Press. doi: 10.1093/sleepadvances/zpae070.004 |
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2024 Journal Article An automated and robust tool for musculoskeletal and finite element modeling of the knee jointEsrafilian, Amir, Chandra, Shekhar S., Gatti, Anthony A., Nissi, Mikko, Mustonen, Anne-Mari, Saisanen, Laura, Reijonen, Jusa, Nieminen, Petteri, Julkunen, Petro, Toyras, Juha, Saxby, David J., Lloyd, David G. and Korhonen, Rami K. (2024). An automated and robust tool for musculoskeletal and finite element modeling of the knee joint. IEEE Transactions on Biomedical Engineering, 72 (1), 1-13. doi: 10.1109/tbme.2024.3438272 |
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2024 Journal Article Relationship between depth-wise refractive index and biomechanical properties of human articular cartilageKhan, Bilour, Nippolainen, Ervin, Shahini, Fatemeh, Nonappa,, Popov, Alexey, Töyräs, Juha and Afara, Isaac O. (2024). Relationship between depth-wise refractive index and biomechanical properties of human articular cartilage. Journal of biomedical optics, 29 (9) 095003. doi: 10.1117/1.JBO.29.9.095003 |
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2024 Journal Article “An excellent servant but a terrible master”: understanding the value of wearables for self-management in people with cystic fibrosis and their healthcare providers – a qualitative studyMattison, Graeme, Canfell, Oliver J., Smith, Daniel, Forrester, Doug, Reid, David, Töyräs, Juha and Dobbins, Chelsea (2024). “An excellent servant but a terrible master”: understanding the value of wearables for self-management in people with cystic fibrosis and their healthcare providers – a qualitative study. International Journal of Medical Informatics, 189 105532, 105532. doi: 10.1016/j.ijmedinf.2024.105532 |
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2024 Journal Article Estimation of photon path length and penetration depth in articular cartilage zonal architecture over the therapeutic windowKafian-Attari, I., Nippolainen, E., Bergmann, F., George, A., Paakkari, P., Mirhashemi, A., Foschum, F., Kienle, A., Toyras, J. and Afara, I. O. (2024). Estimation of photon path length and penetration depth in articular cartilage zonal architecture over the therapeutic window. IEEE Transactions on Biomedical Engineering, 71 (8), 2300-2310. doi: 10.1109/TBME.2024.3368012 |
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2024 Journal Article Infrared spectroscopy can differentiate between cartilage injury models: implication for assessment of cartilage integrityShahini, Fatemeh, Oskouei, Soroush, Nippolainen, Ervin, Mohammadi, Ali, Sarin, Jaakko K., Moller, Nikae C. R. te, Brommer, Harold, Shaikh, Rubina, Korhonen, Rami K., van Weeren, P. René, Töyräs, Juha and Afara, Isaac O. (2024). Infrared spectroscopy can differentiate between cartilage injury models: implication for assessment of cartilage integrity. Annals of Biomedical Engineering, 52 (9), 2521-2533. doi: 10.1007/s10439-024-03540-x |
