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2016 Journal Article Enzyme-driven metabolomic screening: a proof-of-principle method for discovery of plant defence compounds targeted by pathogensCarere, Jason, Colgrave, Michelle L., Stiller, Jiri, Liu, Chunji, Manners, John M., Kazan, Kemal and Gardiner, Donald M. (2016). Enzyme-driven metabolomic screening: a proof-of-principle method for discovery of plant defence compounds targeted by pathogens. New Phytologist, 212 (3), 770-779. doi: 10.1111/nph.14067 |
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2016 Journal Article High-throughput FACS-based mutant screen identifies a gain-of-function allele of the Fusarium graminearum adenylyl cyclase causing deoxynivalenol over-productionBlum, Ailisa, Benfield, Aurelie H., Stiller, Jiri, Kazan, Kemal, Batley, Jacqueline and Gardiner, Donald M. (2016). High-throughput FACS-based mutant screen identifies a gain-of-function allele of the Fusarium graminearum adenylyl cyclase causing deoxynivalenol over-production. Fungal Genetics and Biology, 90, 1-11. doi: 10.1016/j.fgb.2016.02.005 |
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2016 Journal Article EffectorP: Predicting fungal effector proteins from secretomes using machine learningSperschneider, Jana, Gardiner, Donald M., Dodds, Peter N., Tini, Francesco, Covarelli, Lorenzo, Singh, Karam B., Manners, John M. and Taylor, Jennifer M. (2016). EffectorP: Predicting fungal effector proteins from secretomes using machine learning. New Phytologist, 210 (2), 743-761. doi: 10.1111/nph.13794 |
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2016 Journal Article The Fdb3 transcription factor of the Fusarium Detoxification of Benzoxazolinone gene cluster is required for MBOA but not BOA degradation in Fusarium pseudograminearumKettle, Andrew J., Carere, Jason, Batley, Jacqueline, Manners, John M., Kazan, Kemal and Gardiner, Donald M. (2016). The Fdb3 transcription factor of the Fusarium Detoxification of Benzoxazolinone gene cluster is required for MBOA but not BOA degradation in Fusarium pseudograminearum. Fungal Genetics and Biology, 88, 44-53. doi: 10.1016/j.fgb.2016.01.015 |
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2015 Journal Article A gamma-lactamase from cereal infecting Fusarium spp. catalyses the first step in the degradation of the benzoxazolinone class of phytoalexinsKettle, Andrew J., Carere, Jason, Batley, Jacqueline, Benfield, Aurelie H., Manners, John M., Kazan, Kemal and Gardiner, Donald M. (2015). A gamma-lactamase from cereal infecting Fusarium spp. catalyses the first step in the degradation of the benzoxazolinone class of phytoalexins. Fungal Genetics and Biology, 83, 1-9. doi: 10.1016/j.fgb.2015.08.005 |
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2015 Journal Article Genome-wide analysis in three Fusarium pathogens identifies rapidly evolving chromosomes and genes associated with pathogenicitySperschneider, Jana, Gardiner, Donald M., Thatcher, Louise F., Lyons, Rebecca, Singh, Karam B., Manners, John M. and Taylor, Jennifer M. (2015). Genome-wide analysis in three Fusarium pathogens identifies rapidly evolving chromosomes and genes associated with pathogenicity. Genome Biology and Evolution, 7 (6), 1613-1627. doi: 10.1093/gbe/evv092 |
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2015 Journal Article Degradation of the benzoxazolinone class of phytoalexins is important for virulence of Fusarium pseudograminearum towards wheatKettle, Andrew J., Batley, Jacqueline, Benfield, Aurelie H., Manners, John M., Kazan, Kemal and Gardiner, Donald M. (2015). Degradation of the benzoxazolinone class of phytoalexins is important for virulence of Fusarium pseudograminearum towards wheat. Molecular Plant Pathology, 16 (9), 946-962. doi: 10.1111/mpp.12250 |
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2015 Journal Article Brachypodium as an emerging model for cereal-pathogen interactionsFitzgerald, Timothy L., Powell, Jonathan J., Schneebeli, Katharina, Hsia, M. Mandy, Gardiner, Donald M., Bragg, Jennifer N., McIntyre, C. Lynne, Manners, John M., Ayliffe, Mick, Watt, Michelle, Vogel, John P., Henry, Robert J. and Kazan, Kemal (2015). Brachypodium as an emerging model for cereal-pathogen interactions. Annals of Botany, 115 (5), 717-731. doi: 10.1093/aob/mcv010 |
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2015 Journal Article Advances and Challenges in Computational Prediction of Effectors from Plant Pathogenic FungiSperschneider, Jana, Dodds, Peter N., Gardiner, Donald M., Manners, John M., Singh, Karam B. and Taylor, Jennifer M. (2015). Advances and Challenges in Computational Prediction of Effectors from Plant Pathogenic Fungi. PLoS Pathogens, 11 (5) e1004806. doi: 10.1371/journal.ppat.1004806 |
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2014 Journal Article Identification of the biosynthetic gene clusters for the lipopeptides fusaristatin A and W493 B in Fusarium graminearum and F. pseudograminearumSørensen, Jens Laurids, Sondergaard, Teis Esben, Covarelli, Lorenzo, Fuertes, Patricia Romans, Hansen, Frederik Teilfeldt, Frandsen, Rasmus John Normand, Saei, Wagma, Lukassen, Mie Bech, Wimmer, Reinhard, Nielsen, Kristian Fog, Gardiner, Donald Max and Giese, Henriette (2014). Identification of the biosynthetic gene clusters for the lipopeptides fusaristatin A and W493 B in Fusarium graminearum and F. pseudograminearum. Journal of Natural Products, 77 (12), 2619-2625. doi: 10.1021/np500436r |
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2014 Journal Article Transcriptome and allele specificity associated with a 3BL locus for fusarium crown rot resistance in bread wheatMa, Jian, Stiller, Jiri, Zhao, Qiang, Feng, Qi, Cavanagh, Colin, Wang, Penghao, Gardiner, Donald, Choulet, Frédéric, Feuillet, Catherine, Zheng, You-Liang, Wei, Yuming, Yan, Guijun, Han, Bin, Manners, John M. and Liu, Chunji (2014). Transcriptome and allele specificity associated with a 3BL locus for fusarium crown rot resistance in bread wheat. PLoS ONE, 9 (11) e113309. doi: 10.1371/journal.pone.0113309 |
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2014 Journal Article Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectorsSperschneider, Jana, Ying, Hua, Dodds, Peter N., Gardiner, Donald M., Upadhyaya, Narayana M., Singh, Karam B., Manners, John M. and Taylor, Jennifer M. (2014). Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors. Frontiers in Plant Science, 5 (Sep) 372. doi: 10.3389/fpls.2014.00372 |
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2014 Journal Article Genomic analysis of Xanthomonas translucens pathogenic on wheat and barley reveals cross-kingdom gene transfer events and diverse protein delivery systemsGardiner, Donald M., Upadhyaya, Narayana M., Stiller, Jiri, Ellis, Jeff G., Dodds, Peter N., Kazan, Kemal and Manners, John M. (2014). Genomic analysis of Xanthomonas translucens pathogenic on wheat and barley reveals cross-kingdom gene transfer events and diverse protein delivery systems. PLoS ONE, 9 (1) e84995. doi: 10.1371/journal.pone.0084995 |
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2014 Journal Article Genome sequence of Fusarium graminearum isolate CS3005Gardiner, Donald M., Stiller, Jiri and Kazan, Kemal (2014). Genome sequence of Fusarium graminearum isolate CS3005. Genome Announcements, 2 (2) e00227-14. doi: 10.1128/genomeA.00227-14 |
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2014 Book Chapter Application of genomics to the study of pathogenicity and development in fusariumTrail, Frances and Gardiner, Donald M. (2014). Application of genomics to the study of pathogenicity and development in fusarium. Fungal Genomics, 2nd Edition. (pp. 267-300) Berlin, Heidelberg: Springer Berlin Heidelberg. doi: 10.1007/978-3-642-45218-5_11 |
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2013 Journal Article Coverage and consistency: Bioinformatics aspects of the analysis of multirun iTRAQ experiments with wheat leavesPascovici, Dana, Gardiner, Donald M., Song, Xiaomin, Breen, Edmond, Solomon, Peter S., Keighley, Tim and Molloy, Mark P. (2013). Coverage and consistency: Bioinformatics aspects of the analysis of multirun iTRAQ experiments with wheat leaves. Journal of Proteome Research, 12 (11), 4870-4881. doi: 10.1021/pr400531y |
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2013 Journal Article An ABC pleiotropic drug resistance transporter of Fusarium graminearum with a role in crown and root diseases of wheatGardiner, Donald M., Stephens, Amber E., Munn, Alan L. and Manners, John M. (2013). An ABC pleiotropic drug resistance transporter of Fusarium graminearum with a role in crown and root diseases of wheat. FEMS Microbiology Letters, 348 (1), 36-45. doi: 10.1111/1574-6968.12240 |
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2013 Journal Article Cross-kingdom gene transfer facilitates the evolution of virulence in fungal pathogensGardiner, Donald M., Kazan, Kemal and Manners, John M. (2013). Cross-kingdom gene transfer facilitates the evolution of virulence in fungal pathogens. Plant Science, 210, 151-158. doi: 10.1016/j.plantsci.2013.06.002 |
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2013 Journal Article Fusarium pathogenomicsMa, Li-Jun, Geiser, David M., Proctor, Robert H., Rooney, Alejandro P., O'Donnell, Kerry, Trail, Frances, Gardiner, Donald M., Manners, John M. and Kazan, Kemal (2013). Fusarium pathogenomics. Annual Review of Microbiology, 67 (1), 399-416. doi: 10.1146/annurev-micro-092412-155650 |
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2013 Journal Article A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungiSperschneider, Jana, Gardiner, Donald M., Taylor, Jennifer M., Hane, James K., Singh, Karam B. and Manners, John M. (2013). A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi. BMC Genomics, 14 (1) 807. doi: 10.1186/1471-2164-14-807 |
