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2020 Journal Article Lotus japonicus karrikin receptors display divergent ligand-binding specificities and organ-dependent redundancyCarbonnel, Samy, Torabi, Salar, Griesmann, Maximilian, Bleek, Elias, Tang, Yuhong, Buchka, Stefan, Basso, Veronica, Shindo, Mitsuru, Boyer, François-Didier, Wang, Trevor L., Udvardi, Michael, Waters, Mark T. and Gutjahr, Caroline (2020). Lotus japonicus karrikin receptors display divergent ligand-binding specificities and organ-dependent redundancy. PLoS Genetics, 16 (12 December) e1009249, e1009249. doi: 10.1371/journal.pgen.1009249 |
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2020 Journal Article GmVTL1a is an iron transporter on the symbiosome membrane of soybean with an important role in nitrogen fixationBrear, Ella M., Bedon, Frank, Gavrin, Aleksandr, Kryvoruchko, Igor S., Torres-Jerez, Ivone, Udvardi, Michael K., Day, David A. and Smith, Penelope M. C. (2020). GmVTL1a is an iron transporter on the symbiosome membrane of soybean with an important role in nitrogen fixation. New Phytologist, 228 (2), 667-681. doi: 10.1111/nph.16734 |
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2020 Journal Article Silencing Folylpolyglutamate Synthetase1 (FPGS1) in Switchgrass (Panicum virgatum L.) improves lignocellulosic biofuel productionMazarei, Mitra, Baxter, Holly L., Srivastava, Avinash, Li, Guifen, Xie, Hongli, Dumitrache, Alexandru, Rodriguez, Miguel, Natzke, Jace M., Zhang, Ji-Yi, Turner, Geoffrey B., Sykes, Robert W., Davis, Mark F., Udvardi, Michael K., Wang, Zeng-Yu, Davison, Brian H., Blancaflor, Elison B., Tang, Yuhong and Stewart, Charles Neal (2020). Silencing Folylpolyglutamate Synthetase1 (FPGS1) in Switchgrass (Panicum virgatum L.) improves lignocellulosic biofuel production. Frontiers in Plant Science, 11 843. doi: 10.3389/fpls.2020.00843 |
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2020 Journal Article MtSSPdb: the Medicago truncatula small secreted peptide database1[OPEN]Boschiero, Clarissa, Dai, Xinbin, Lundquist, Peter Knut, Roy, Sonali, Christian de Bang, Thomas, Zhang, Shulan, Zhuang, Zhaohong, Torres-Jerez, Ivone, Udvardi, Michael K., Scheible, Wolf-Rüdiger and Zhao, Patrick Xuechun (2020). MtSSPdb: the Medicago truncatula small secreted peptide database1[OPEN]. Plant Physiology, 183 (1), 399-413. doi: 10.1104/pp.19.01088 |
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2020 Journal Article Transcriptomic and metabolomic adaptation of Nannochloropsis gaditana grown under different light regimesPatelou, Maria, Infante, Carlos, Dardelle, Flavien, Randewig, Dörte, Kouri, Evangelia D., Udvardi, Michael K., Tsiplakou, Eleni, Mantecón, Lalia and Flemetakis, Emmanouil (2020). Transcriptomic and metabolomic adaptation of Nannochloropsis gaditana grown under different light regimes. Algal Research, 45 101735, 101735. doi: 10.1016/j.algal.2019.101735 |
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2019 Journal Article The future of legume genetic data resources: challenges, opportunities, and prioritiesBauchet, Guillaume J., Bett, Kirstin E., Cameron, Connor T., Campbell, Jacqueline D., Cannon, Ethalinda K. S., Cannon, Steven B., Carlson, Joseph W., Chan, Agnes, Cleary, Alan, Close, Timothy J., Cook, Douglas R., Cooksey, Amanda M., Coyne, Clarice, Dash, Sudhansu, Dickstein, Rebecca, Farmer, Andrew D., Fernández-Baca, David, Hokin, Samuel, Jones, Elizabeth S., Kang, Yun, Monteros, Maria J., Muñoz-Amatriaín, María, Mysore, Kirankumar S., Pislariu, Catalina I., Richards, Chris, Shi, Ainong, Town, Christopher D., Udvardi, Michael, von Wettberg, Eric Bishop ... Zhao, Patrick X. (2019). The future of legume genetic data resources: challenges, opportunities, and priorities. Legume Science, 1 (1) e16, 1-15. doi: 10.1002/leg3.16 |
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2019 Journal Article Celebrating 20 years of genetic discoveries in legume nodulation and symbiotic nitrogen fixationRoy, Sonali, Liu, Wei, Nandety, Raja Sekhar, Crook, Ashley, Mysore, Kirankumar S., Pislariu, Catalina I., Frugoli, Julia, Dickstein, Rebecca and Udvardi, Michael K. (2019). Celebrating 20 years of genetic discoveries in legume nodulation and symbiotic nitrogen fixation. The Plant Cell, 32 (1), 15-41. doi: 10.1105/tpc.19.00279 |
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2019 Journal Article GWASpro: A high-performance genome-wide association analysis serverKim, Bongsong, Dai, Xinbin, Zhang, Wenchao, Zhuang, Zhaohong, Sanchez, Darlene L, Lübberstedt, Thomas, Kang, Yun, Udvardi, Michael K., Beavis, William D., Xu, Shizhong and Zhao, Patrick X. (2019). GWASpro: A high-performance genome-wide association analysis server. Bioinformatics, 35 (14) bty989, 2512-2514. doi: 10.1093/bioinformatics/bty989 |
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2019 Journal Article A protein complex required for polar growth of rhizobial infection threadsLiu, Cheng-Wu, Breakspear, Andrew, Stacey, Nicola, Findlay, Kim, Nakashima, Jin, Ramakrishnan, Karunakaran, Liu, Miaoxia, Xie, Fang, Endre, Gabriella, de Carvalho-Niebel, Fernanda, Oldroyd, Giles E. D., Udvardi, Michael K., Fournier, Joëlle and Murray, Jeremy D. (2019). A protein complex required for polar growth of rhizobial infection threads. Nature Communications, 10 (1) 2848. doi: 10.1038/s41467-019-10029-y |
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2019 Journal Article Genome-wide analysis of flanking sequences reveals that Tnt1 insertion is positively correlated with gene methylation in Medicago truncatulaSun, Liang, Gill, Upinder S., Nandety, Raja Sekhar, Kwon, Soonil, Mehta, Perdeep, Dickstein, Rebecca, Udvardi, Michael K., Mysore, Kirankumar S. and Wen, Jiangqi (2019). Genome-wide analysis of flanking sequences reveals that Tnt1 insertion is positively correlated with gene methylation in Medicago truncatula. The Plant Journal, 98 (6), 1106-1119. doi: 10.1111/tpj.14291 |
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2019 Journal Article The nodule-specific PLAT domain protein NPD1 is required for nitrogen-fixing symbiosisPislariu, Catalina I., Sinharoy, Senjuti, Torres-Jerez, Ivone, Nakashima, Jin, Blancaflor, Elison B. and Udvardi, Michael K. (2019). The nodule-specific PLAT domain protein NPD1 is required for nitrogen-fixing symbiosis. Plant Physiology, 180 (3), 1480-1497. doi: 10.1104/pp.18.01613 |
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2019 Journal Article Genome‐wide association analysis of salinity responsive traits in Medicago truncatulaKang, Yun, Torres‐Jerez, Ivone, An, Zewei, Greve, Veronica, Huhman, David, Krom, Nicholas, Cui, Yuehua and Udvardi, Michael (2019). Genome‐wide association analysis of salinity responsive traits in Medicago truncatula. Plant, Cell and Environment, 42 (5), 1513-1531. doi: 10.1111/pce.13508 |
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2018 Journal Article Functional analysis of cellulose synthase CesA4 and CesA6 genes in switchgrass (Panicum virgatum) by overexpression and RNAi-mediated gene silencingMazarei, Mitra, Baxter, Holly L, Li, Mi, Biswal, Ajaya K, Kim, Keonhee, Meng, Xianzhi, Pu, Yunqiao, Wuddineh, Wegi A, Zhang, Ji-Yi, Turner, Geoffrey B, Sykes, Robert W, Davis, Mark F, Udvardi, Michael K, Wang, Zeng-Yu, Mohnen, Debra, Ragauskas, Arthur J, Labbé, Nicole and Stewart, C Neal (2018). Functional analysis of cellulose synthase CesA4 and CesA6 genes in switchgrass (Panicum virgatum) by overexpression and RNAi-mediated gene silencing. Frontiers in Plant Science, 9 1114. doi: 10.3389/fpls.2018.01114 |
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2018 Journal Article MtMTP2-facilitated zinc transport into intracellular compartments is essential for nodule development in Medicago truncatulaLeón-Mediavilla, Javier, Senovilla, Marta, Montiel, Jesús, Gil-Díez, Patricia, Saez, Ángela, Kryvoruchko, Igor S, Reguera, María, Udvardi, Michael K, Imperial, Juan and González-Guerrero, Manuel (2018). MtMTP2-facilitated zinc transport into intracellular compartments is essential for nodule development in Medicago truncatula. Frontiers in Plant Science, 9 990. doi: 10.3389/fpls.2018.00990 |
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2018 Journal Article Medicago truncatula copper transporter 1 (MtCOPT1) delivers copper for symbiotic nitrogen fixationSenovilla, Marta, Castro-Rodríguez, Rosario, Abreu, Isidro, Escudero, Viviana, Kryvoruchko, Igor, Udvardi, Michael K., Imperial, Juan and González-Guerrero, Manuel (2018). Medicago truncatula copper transporter 1 (MtCOPT1) delivers copper for symbiotic nitrogen fixation. New Phytologist, 218 (2), 696-709. doi: 10.1111/nph.14992 |
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2018 Journal Article An iron-activated citrate transporter, MtMATE67, is required for symbiotic nitrogen fixationKryvoruchko, Igor S., Routray, Pratyush, Sinharoy, Senjuti, Torres-Jerez, Ivone, Tejada-Jiménez, Manuel, Finney, Lydia A., Nakashima, Jin, Pislariu, Catalina I., Benedito, Vagner A., González-Guerrero, Manuel, Roberts, Daniel M. and Udvardi, Michael K. (2018). An iron-activated citrate transporter, MtMATE67, is required for symbiotic nitrogen fixation. Plant Physiology, 176 (3), 2315-2329. doi: 10.1104/pp.17.01538 |
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2018 Journal Article Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesisBiswal, Ajaya K., Atmodjo, Melani A., Li, Mi, Baxter, Holly L., Yoo, Chang Geun, Pu, Yunqiao, Lee, Yi-Ching, Mazarei, Mitra, Black, Ian M., Zhang, Ji-Yi, Ramanna, Hema, Bray, Adam L., King, Zachary R., Lafayette, Peter R., Pattathil, Sivakumar, Donohoe, Bryon S., Mohanty, Sushree S., Ryno, David, Yee, Kelsey, Thompson, Olivia A., Rodriguez, Miguel, Dumitrache, Alexandru, Natzke, Jace, Winkeler, Kim, Collins, Cassandra, Yang, Xiaohan, Tan, Li, Sykes, Robert W., Gjersing, Erica L. ... Mohnen, Debra (2018). Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis. Nature Biotechnology, 36 (3), 249-257. doi: 10.1038/nbt.4067 |
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2018 Journal Article Senescence and nitrogen use efficiency in perennial grasses for forage and biofuel productionYang, Jiading and Udvardi, Michael (2018). Senescence and nitrogen use efficiency in perennial grasses for forage and biofuel production. Journal of Experimental Botany, 69 (4), 855-865. doi: 10.1093/jxb/erx241 |
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2017 Journal Article Development and use of a switchgrass (Panicum virgatum L.) transformation pipeline by the BioEnergy Science Center to evaluate plants for reduced cell wall recalcitranceNelson, Richard S, Stewart, C Neal, Gou, Jiqing, Holladay, Susan, Gallego-Giraldo, Lina, Flanagan, Amy, Mann, David G J, Hisano, Hiroshi, Wuddineh, Wegi A, Poovaiah, Charleson R, Srivastava, Avinash, Biswal, Ajaya K, Shen, Hui, Escamilla-Treviño, Luis L, Yang, Jiading, Hardin, C Frank, Nandakumar, Rangaraj, Fu, Chunxiang, Zhang, Jiyi, Xiao, Xirong, Percifield, Ryan, Chen, Fang, Bennetzen, Jeffrey L, Udvardi, Michael, Mazarei, Mitra, Dixon, Richard A, Wang, Zeng-Yu, Tang, Yuhong, Mohnen, Debra and Davison, Brian H (2017). Development and use of a switchgrass (Panicum virgatum L.) transformation pipeline by the BioEnergy Science Center to evaluate plants for reduced cell wall recalcitrance. Biotechnology for Biofuels, 10 (1) 309. doi: 10.1186/s13068-017-0991-x |
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2017 Journal Article Genome-wide identification of peptides involved in macronutrient responses and nodulationde Bang, Thomas C., Lundquist, Peter K., Dai, Xinbin, Boschiero, Clarissa, Zhuang, Zhaohong, Pant, Pooja, Torres-Jerez, Ivone, Roy, Sonali, Nogales, Joaquina, Veerappan, Vijaykumar, Dickstein, Rebecca, Udvardi, Michael K., Zhao, Patrick X. and Scheible, Wolf-Rüdiger (2017). Genome-wide identification of peptides involved in macronutrient responses and nodulation. Plant Physiology, 175 (4), 1669-1689. doi: 10.1104/pp.17.01096 |
