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2017 Book Chapter Enabling reverse genetics in Medicago truncatula using high-throughput sequencing for Tnt1 flanking sequence recoveryCheng, Xiaofei, Krom, Nick, Zhang, Shulan, Mysore, Kirankumar S., Udvardi, Michael and Wen, Jiangqi (2017). Enabling reverse genetics in Medicago truncatula using high-throughput sequencing for Tnt1 flanking sequence recovery. Plant genomics: methods and protocols. (pp. 25-37) New York, NY USA: Humana Press. doi: 10.1007/978-1-4939-7003-2_3 |
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2016 Journal Article Lotus japonicus NF-YA1 plays an essential role during nodule differentiation and targets members of the SHI/STY gene familyHossain, Md Shakhawat, Shrestha, Arina, Zhong, Sihui, Miri, Mandana, Austin, Ryan S, Sato, Shusei, Ross, Loretta, Huebert, Terry, Tromas, Alexandre, Torres-Jerez, Ivone, Tang, Yuhong, Udvardi, Michael, Murray, Jeremy D and Szczyglowski, Krzysztof (2016). Lotus japonicus NF-YA1 plays an essential role during nodule differentiation and targets members of the SHI/STY gene family. Molecular Plant - Microbe Interactions, 29 (12), 950-964. doi: 10.1094/MPMI-10-16-0206-R |
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2016 Journal Article Downregulation of a UDP-Arabinomutase Gene in Switchgrass ( Panicum virgatum L.) Results in Increased Cell Wall Lignin While Reducing Arabinose-GlycansWillis, Jonathan D, Smith, James A, Mazarei, Mitra, Zhang, Ji-Yi, Turner, Geoffrey B, Decker, Stephen R, Sykes, Robert W, Poovaiah, Charleson R, Baxter, Holly L, Mann, David G J, Davis, Mark F, Udvardi, Michael K, Peña, Maria J, Backe, Jason, Bar-Peled, Maor and Stewart, C N (2016). Downregulation of a UDP-Arabinomutase Gene in Switchgrass ( Panicum virgatum L.) Results in Increased Cell Wall Lignin While Reducing Arabinose-Glycans. Frontiers in plant science, 7 (OCTOBER2016) 1580, 1-18. doi: 10.3389/fpls.2016.01580 |
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2016 Journal Article The Vigna unguiculata Gene Expression Atlas (Vu GEA ) from de novo assembly and quantification of RNA ‐seq data provides insights into seed maturation mechanismsYao, Shaolun, Jiang, Chuan, Huang, Ziyue, Torres‐Jerez, Ivone, Chang, Junil, Zhang, Heng, Udvardi, Michael, Liu, Renyi and Verdier, Jerome (2016). The Vigna unguiculata Gene Expression Atlas (Vu GEA ) from de novo assembly and quantification of RNA ‐seq data provides insights into seed maturation mechanisms. The Plant Journal, 88 (2), 318-327. doi: 10.1111/tpj.13279 |
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2016 Journal Article Analysis of Large Seeds from Three Different Medicago truncatula Ecotypes Reveals a Potential Role of Hormonal Balance in Final Size Determination of Legume GrainsBandyopadhyay, Kaustav, Uluçay, Orhan, Şakiroğlu, Muhammet, Udvardi, Michael K. and Verdier, Jerome (2016). Analysis of Large Seeds from Three Different Medicago truncatula Ecotypes Reveals a Potential Role of Hormonal Balance in Final Size Determination of Legume Grains. International Journal of Molecular Sciences, 17 (9) 1472, 1-13. doi: 10.3390/ijms17091472 |
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2016 Journal Article Nitrogen remobilization and conservation, and underlying senescence-associated gene expression in the perennial switchgrass Panicum virgatumYang, Jiading, Worley, Eric, Ma, Qin, Li, Jun, Torres-Jerez, Ivone, Li, Gaoyang, Zhao, Patrick X., Xu, Ying, Tang, Yuhong and Udvardi, Michael (2016). Nitrogen remobilization and conservation, and underlying senescence-associated gene expression in the perennial switchgrass Panicum virgatum. New Phytologist, 211 (1), 75-89. doi: 10.1111/nph.13898 |
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2016 Journal Article Symbiotic nitrogen fixation and the challenges to its extension to nonlegumesMus, Florence, Crook, Matthew B., Garcia, Kevin, Garcia Costas, Amaya, Geddes, Barney A., Kouri, Evangelia D., Paramasivan, Ponraj, Ryu, Min-Hyung, Oldroyd, Giles E. D., Poole, Philip S., Udvardi, Michael K., Voigt, Christopher A., Ané, Jean-Michel and Peters, John W. (2016). Symbiotic nitrogen fixation and the challenges to its extension to nonlegumes. Applied and Environmental Microbiology, 82 (13), 3698-3710. doi: 10.1128/AEM.01055-16 |
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2016 Journal Article MtSWEET11, a nodule-specific sucrose transporter of Medicago truncatulaKryvoruchko, Igor S., Sinharoy, Senjuti, Torres-Jerez, Ivone, Sosso, Davide, Pislariu, Catalina I., Guan, Dian, Murray, Jeremy, Benedito, Vagner A., Frommer, Wolf B. and Udvardi, Michael K. (2016). MtSWEET11, a nodule-specific sucrose transporter of Medicago truncatula. Plant Physiology, 171 (1), 554-565. doi: 10.1104/pp.15.01910 |
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2016 Journal Article Identification and overexpression of a knotted1-like transcription factor in switchgrass (Panicum virgatum L.) for lignocellulosic feedstock improvementWuddineh, Wegi A., Mazarei, Mitra, Zhang, Ji-Yi, Turner, Geoffrey B., Sykes, Robert W., Decker, Stephen R., Davis, Mark F., Udvardi, Michael K. and Stewart, C. Neal (2016). Identification and overexpression of a knotted1-like transcription factor in switchgrass (Panicum virgatum L.) for lignocellulosic feedstock improvement. Frontiers in Plant Science, 7 (APR2016) 520. doi: 10.3389/fpls.2016.00520 |
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2016 Journal Article A Medicago truncatula Cystathionine-β-Synthase-like Domain-Containing Protein Is Required for Rhizobial Infection and Symbiotic Nitrogen FixationSinharoy, Senjuti, Liu, Chengwu, Breakspear, Andrew, Guan, Dian, Shailes, Sarah, Nakashima, Jin, Zhang, Shulan, Wen, Jiangqi, Torres-Jerez, Ivone, Oldroyd, Giles, Murray, Jeremy D. and Udvardi, Michael K. (2016). A Medicago truncatula Cystathionine-β-Synthase-like Domain-Containing Protein Is Required for Rhizobial Infection and Symbiotic Nitrogen Fixation. Plant Physiology, 170 (4), 2204-2217. doi: 10.1104/pp.15.01853 |
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2015 Journal Article Loss of the nodule-specific cysteine rich peptide, NCR169, abolishes symbiotic nitrogen fixation in the Medicago truncatula dnf7 mutantHorváth, Beatrix, Domonkos, Ágota, Kereszt, Attila, Szűcs, Attila, Ábrahám, Edit, Ayaydin, Ferhan, Bóka, Károly, Chen, Yuhui, Chen, Rujin, Murray, Jeremy D., Udvardi, Michael K., Kondorosi, Éva and Kaló, Péter (2015). Loss of the nodule-specific cysteine rich peptide, NCR169, abolishes symbiotic nitrogen fixation in the Medicago truncatula dnf7 mutant. Proceedings of the National Academy of Sciences of the United States of America, 112 (49), 15232-15237. doi: 10.1073/pnas.1500777112 |
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2015 Journal Article Genome-wide association of drought-related and biomass traits with HapMap SNPs in Medicago truncatulaKang, Yun, Sakiroglu, Muhammet, Krom, Nicholas, Stanton-Geddes, John, Wang, Mingyi, Lee, Yi-Ching, Young, Nevin D and Udvardi, Michael (2015). Genome-wide association of drought-related and biomass traits with HapMap SNPs in Medicago truncatula. Plant, Cell and Environment, 38 (10), 1997-2011. doi: 10.1111/pce.12520 |
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2015 Journal Article Standards for plant synthetic biology: A common syntax for exchange of DNA partsPatron, Nicola J., Orzaez, Diego, Marillonnet, Sylvestre, Warzecha, Heribert, Matthewman, Colette, Youles, Mark, Raitskin, Oleg, Leveau, Aymeric, Farré, Gemma, Rogers, Christian, Smith, Alison, Hibberd, Julian, Webb, Alex A.R., Locke, James, Schornack, Sebastian, Ajioka, Jim, Baulcombe, David C., Zipfel, Cyril, Kamoun, Sophien, Jones, Jonathan D.G., Kuhn, Hannah, Robatzek, Silke, Van Esse, H. Peter, Sanders, Dale, Oldroyd, Giles, Martin, Cathie, Field, Rob, O'Connor, Sarah, Fox, Samantha ... Haseloff, Jim (2015). Standards for plant synthetic biology: A common syntax for exchange of DNA parts. New Phytologist, 208 (1), 13-19. doi: 10.1111/nph.13532 |
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2015 Journal Article Nitrogen-Fixing Nodules Are an Important Source of Reduced Sulfur, Which Triggers Global Changes in Sulfur Metabolism in Lotus japonicusKalloniati, Chrysanthi, Krompas, Panagiotis, Karalias, Georgios, Udvardi, Michael K., Rennenberg, Heinz, Herschbach, Cornelia and Flemetakis, Emmanouil (2015). Nitrogen-Fixing Nodules Are an Important Source of Reduced Sulfur, Which Triggers Global Changes in Sulfur Metabolism in Lotus japonicus. The Plant Cell, 27 (9), 2384-2400. doi: 10.1105/tpc.15.00108 |
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2015 Journal Article Targeted switchgrass BAC library screening and sequence analysis identifies predicted biomass and stress response-related genesSharma, Manoj K., Sharma, Rita, Cao, Peijian, Harkenrider, Mitch, Jenkins, Jerry, Grimwood, Jane, Zhang, Jiyi, Udvardi, Michael K., Schmutz, Jeremy and Ronald, Pamela C. (2015). Targeted switchgrass BAC library screening and sequence analysis identifies predicted biomass and stress response-related genes. BioEnergy Research, 9 (1), 109-122. doi: 10.1007/s12155-015-9667-1 |
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2015 Journal Article Global gene expression profiling of two switchgrass cultivars following inoculation with Burkholderia phytofirmans strain PsJNLara-Chavez, Alejandra, Lowman, Scott, Kim, Seonhwa, Tang, Yuhong, Zhang, Jiyi, Udvardi, Michael, Nowak, Jerzy, Flinn, Barry and Mei, Chuansheng (2015). Global gene expression profiling of two switchgrass cultivars following inoculation with Burkholderia phytofirmans strain PsJN. Journal of Experimental Botany, 66 (14), 4337-4350. doi: 10.1093/jxb/erv096 |
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2015 Journal Article Identification and overexpression of gibberellin 2-oxidase (GA2ox) in switchgrass (Panicum virgatum L.) for improved plant architecture and reduced biomass recalcitranceWuddineh, Wegi A., Mazarei, Mitra, Zhang, Jiyi, Poovaiah, Charleson R., Mann, David G. J., Ziebell, Angela, Sykes, Robert W., Davis, Mark F., Udvardi, Michael K. and Stewart, Charles Neal (2015). Identification and overexpression of gibberellin 2-oxidase (GA2ox) in switchgrass (Panicum virgatum L.) for improved plant architecture and reduced biomass recalcitrance. Plant Biotechnology Journal, 13 (5), 636-647. doi: 10.1111/pbi.12287 |
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2015 Journal Article Medicago truncatula natural resistance-associated macrophage Protein1 is required for iron uptake by rhizobia-infected nodule cellsTejada-Jiménez, Manuel, Castro-Rodríguez, Rosario, Kryvoruchko, Igor, Lucas, M. Mercedes, Udvardi, Michael, Imperial, Juan and González-Guerrero, Manuel (2015). Medicago truncatula natural resistance-associated macrophage Protein1 is required for iron uptake by rhizobia-infected nodule cells. Plant Physiology, 168 (1), 258-272. doi: 10.1104/pp.114.254672 |
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2015 Journal Article Suppression of arbuscule degeneration in Medicago truncatula phosphate transporter4 mutants is dependent on the ammonium transporter 2 family protein AMT2;3Breuillin-Sessoms, Florence, Floss, Daniela S., Karen Gomez, S., Pumplin, Nathan, Ding, Yi, Levesque-Tremblay, Veronique, Noar, Roslyn D., Daniels, Dierdra A., Bravo, Armando, Eaglesham, James B., Benedito, Vagner A., Udvardi, Michael K. and Harrison, Maria J. (2015). Suppression of arbuscule degeneration in Medicago truncatula phosphate transporter4 mutants is dependent on the ammonium transporter 2 family protein AMT2;3. Plant Cell, 27 (4), 1352-1366. doi: 10.1105/tpc.114.131144 |
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2015 Journal Article DASH transcription factor impacts Medicago truncatula seed size by its action on embryo morphogenesis and auxin homeostasisNoguero, Mélanie, Le Signor, Christine, Vernoud, Vanessa, Bandyopadhyay, Kaustav, Sanchez, Myriam, Fu, Chunxiang, Torres-Jerez, Ivone, Wen, Jiangqi, Mysore, Kirankumar S, Gallardo, Karine, Udvardi, Michael, Thompson, Richard and Verdier, Jerome (2015). DASH transcription factor impacts Medicago truncatula seed size by its action on embryo morphogenesis and auxin homeostasis. The Plant Journal, 81 (3), 453-466. doi: 10.1111/tpj.12742 |
