Overview
Background
Biography
Senior Lecturer Dr Ramon Ganigué leads a research program on microbial biotechnologies for sustainable manufacturing, addressing critical challenges such as climate change and circular resource management for the benefit of people and planet.
He obtained his PhD in Environmental Engineering from the University of Girona, Spain. Prior to joining The University of Queensland (UQ), Ramon held academic and research positions across Europe and Australia, including Assistant Professor (2017–2022) and Associate Professor (2022–2026) in the Department of Biotechnology at Ghent University, Belgium, alongside postdoctoral appointments at Ghent University, the University of Girona, and UQ.
He has published over 100 peer‑reviewed articles and established extensive international collaborations spanning Europe, Australia, China, and North America. Ramon has led multiple large-scale, multi-partner research projects and, over the past five years, has secured approximately AUD 10 million in competitive European funding to support his team’s activities. In 2024, he was appointed Associate Editor of Frontiers in Bioprocess Engineering.
Research
Vision: To harness the diversity and functionality of microbial systems to enable sustainable, circular manufacturing processes that decouple production from fossil resources and support the transition to a net-zero bioeconomy.
Mission: To engineer robust, scalable microbial bioprocesses that convert complex, non-refined feedstocks into high-value products for the benefit of people and planet. His team integrates microbial physiology, community engineering, and process design to unlock the potential of non-model microorganisms and microbiomes, while developing intensified and industrially relevant bioprocess platforms.
Dr Ramon Ganigué’s research lies at the intersection of microbial biotechnology, chemical engineering, and sustainability, with a focus on engineering microbial bioprocesses for sustainable production systems. His team applies an integrated toolbox spanning microbial physiology, community engineering, metabolic and process modelling, and bioprocess intensification to develop next-generation biotechnologies.
Central to this approach is a deep understanding of microbial physiology and metabolism. The research places particular emphasis on non-model microorganisms, including anaerobes, extremophiles, and complex microbiomes, which offer unique and underexploited capabilities for sustainable bioproduction. These systems are leveraged to convert non-refined and complex feedstocks into value-added products, such as biochemicals, biofuels, bioplastics, and alternative proteins.
A key focus of the program is addressing the operational and engineering challenges that limit industrial deployment. This includes the development of continuous, intensified, and non-axenic bioprocesses, as well as innovative reactor configurations designed to enhance robustness, efficiency, and scalability. Through this integrated approach, the research aims to bridge the gap between fundamental microbiology and industrial application, enabling practical and scalable solutions for sustainable manufacturing.
While sustainable biomanufacturing remains a core focus, the group actively explores the application of its microbial biotechnology toolbox to other systems and challenges aligned with sustainability goals for people and planet.
Teaching & learning contributions
Ramon is an experienced educator contributing across undergraduate and postgraduate programs. He currently lectures in key courses including Principles of Biomedical and Bioprocess Engineering (BIOE1001), Environmental Systems (ENVE2501), and the capstone Process Engineering Design Project (CHEE4001). He is also co-editor of the 2024 IWA Scientific Book Resource Recovery from Water: Principles and Application, and has contributed to MOOCs on resource recovery from wastewater and carbon capture and utilisation technologies.
Availability
- Dr Ramon Ganigue is:
- Available for supervision
Fields of research
Qualifications
- Bachelor of Environmental Sciences, Universitat de Girona
- Masters (Research) of Environmental Biotechnology, Universitat de Girona
- Doctor of Philosophy, Universitat de Girona
Works
Search Professor Ramon Ganigue’s works on UQ eSpace
2020
Journal Article
Impact of substrate and growth conditions on microbial protein production and composition
Sakarika, Myrsini, Candry, Pieter, Depoortere, Mathilde, Ganigue, Ramon and Rabaey, Korneel (2020). Impact of substrate and growth conditions on microbial protein production and composition. Bioresource Technology, 317 124021, 1-10. doi: 10.1016/j.biortech.2020.124021
2020
Journal Article
Mildly acidic pH selects for chain elongation to caproic acid over alternative pathways during lactic acid fermentation
Candry, Pieter, Radic, Ljubomir, Favere, Jorien, Carvajal-Arroyo, Jose Maria, Rabaey, Korneel and Ganigue, Ramon (2020). Mildly acidic pH selects for chain elongation to caproic acid over alternative pathways during lactic acid fermentation. Water Research, 186 116396, 1-9. doi: 10.1016/j.watres.2020.116396
2020
Journal Article
Ethanol:propionate ratio drives product selectivity in odd-chain elongation with Clostridium kluyveri and mixed communities
Candry, Pieter, Ulcar, Barbara, Petrognani, Camille, Rabaey, Korneel and Ganigue, Ramon (2020). Ethanol:propionate ratio drives product selectivity in odd-chain elongation with Clostridium kluyveri and mixed communities. Bioresource Technology, 313 123651. doi: 10.1016/j.biortech.2020.123651
2020
Journal Article
The type of microorganism and substrate determines the odor fingerprint of dried bacteria targeting microbial protein production
Sakarika, Myrsini, Sosa, Daylan Amelia Tzompa, Depoortere, Mathilde, Rottiers, Hayley, Ganigue, Ramon, Dewettinck, Koen and Rabaey, Korneel (2020). The type of microorganism and substrate determines the odor fingerprint of dried bacteria targeting microbial protein production. Fems Microbiology Letters, 367 (18) fnaa138. doi: 10.1093/femsle/fnaa138
2020
Journal Article
Open microbiome dominated by Clostridium and Eubacterium converts methanol into i-butyrate and n-butyrate
Huang, Shengle, Kleerebezem, Robbert, Rabaey, Korneel and Ganigue, Ramon (2020). Open microbiome dominated by Clostridium and Eubacterium converts methanol into i-butyrate and n-butyrate. Applied Microbiology and Biotechnology, 104 (11), 5119-5131. doi: 10.1007/s00253-020-10551-w
2020
Journal Article
Microbial electrosynthesis from CO2: forever a promise?
Prevoteau, Antonin, Carvajal-Arroyo, Jose M., Ganigue, Ramon and Rabaey, Korneel (2020). Microbial electrosynthesis from CO2: forever a promise?. Current Opinion in Biotechnology, 62, 48-57. doi: 10.1016/j.copbio.2019.08.014
2020
Journal Article
Enrichment and characterisation of ethanol chain elongating communities from natural and engineered environments
Candry, Pieter, Huang, Shengle, Carvajal-Arroyo, Jose Maria, Rabaey, Korneel and Ganigue, Ramon (2020). Enrichment and characterisation of ethanol chain elongating communities from natural and engineered environments. Scientific Reports, 10 (1) 3682. doi: 10.1038/s41598-020-60052-z
2019
Journal Article
Fruity flavors from waste: a novel process to upgrade crude glycerol to ethyl valerate
Ganigué, Ramon, Naert, Pieter, Candry, Pieter, de Smedt, Jonas, Stevens, Christian V. and Rabaey, Korneel (2019). Fruity flavors from waste: a novel process to upgrade crude glycerol to ethyl valerate. Bioresource Technology, 289 121574, 1-11. doi: 10.1016/j.biortech.2019.121574
2019
Journal Article
Granular fermentation enables high rate caproic acid production from solid-free thin stillage
Carvajal-Arroyo, Jose M., Candry, Pieter, Andersen, Stephen J., Props, Ruben, Seviour, Thomas, Ganigue, Ramon and Rabaey, Korneel (2019). Granular fermentation enables high rate caproic acid production from solid-free thin stillage. Green Chemistry, 21 (6), 1330-1339. doi: 10.1039/c8gc03648a
2019
Journal Article
Anaerobic ureolysis of source-separated urine for NH<sub>3</sub> recovery enables direct removal of divalent ions at the toilet
Christiaens, Marlies E. R., De Vrieze, Jo, Clinckemaillie, Lorenzo, Ganigue, Ramon and Rabaey, Korneel (2019). Anaerobic ureolysis of source-separated urine for NH3 recovery enables direct removal of divalent ions at the toilet. Water Research, 148, 97-105. doi: 10.1016/j.watres.2018.10.021
2018
Journal Article
A novel high-throughput method for kinetic characterisation of anaerobic bioproduction strains, applied to <i>Clostridium kluyveri</i>
Candry, Pieter, Van Daele, Timothy, Denis, Kyrina, Amerlinck, Youri, Andersen, Stephen J., Ganigue, Ramon, Arends, Jan B. A., Nopens, Ingmar and Rabaey, Korneel (2018). A novel high-throughput method for kinetic characterisation of anaerobic bioproduction strains, applied to Clostridium kluyveri. Scientific Reports, 8 (1) 9724. doi: 10.1038/s41598-018-27594-9
2018
Journal Article
Capture-Ferment-Upgrade: A Three-Step Approach for the Valorization of Sewage Organics as Commodities
Alloul, Abbas, Ganigue, Ramon, Spiller, Marc, Meerburg, Francis, Cagnetta, Cristina, Rabaey, Korneel and Vlaeminck, Siegfried E. (2018). Capture-Ferment-Upgrade: A Three-Step Approach for the Valorization of Sewage Organics as Commodities. Environmental Science & Technology, 52 (12), 6729-6742. doi: 10.1021/acs.est.7b05712
2018
Journal Article
Effect of ethanol and butanol on autotrophic growth of model homoacetogens
Ramio-Pujol, Sara, Ganigue, Ramon, Baneras, Lluis and Colprim, Jesus (2018). Effect of ethanol and butanol on autotrophic growth of model homoacetogens. Fems Microbiology Letters, 365 (10) fny084. doi: 10.1093/femsle/fny084
2018
Journal Article
Improved sulfide mitigation in sewers through on-line control of ferrous salt dosing
Ganigué, Ramon, Jiang, Guangming, Liu, Yiqi, Sharma, Keshab, Wang, Yue-Cong, Gonzalez, José, Nguyen, Tung and Yuan, Zhiguo (2018). Improved sulfide mitigation in sewers through on-line control of ferrous salt dosing. Water Research, 135, 302-310. doi: 10.1016/j.watres.2018.02.022
2017
Journal Article
Simultaneous use of caustic and oxygen for efficient sulfide control in sewers
Lin, Hui-Wen, Lu, Yang, Ganigue, Ramon, Sharma, Keshab R., Rabaey, Korneel, Yuan, Zhiguo and Pikaar, Ilje (2017). Simultaneous use of caustic and oxygen for efficient sulfide control in sewers. Science of the Total Environment, 601-602, 776-783. doi: 10.1016/j.scitotenv.2017.05.225
2017
Journal Article
Microbial electrosynthesis of butyrate from carbon dioxide: Production and extraction
Batlle-Vilanova, Pau, Ganigué, Ramon, Ramió-Pujol, Sara, Bañeras, Lluís, Jiménez, Gerard, Hidalgo, Manuela, Balaguer, M. Dolors, Colprim, Jesús and Puig, Sebastià (2017). Microbial electrosynthesis of butyrate from carbon dioxide: Production and extraction. Bioelectrochemistry, 117, 57-64. doi: 10.1016/j.bioelechem.2017.06.004
2017
Journal Article
Modelling the simultaneous production and separation of acetic acid from CO2 using an anion exchange membrane microbial electrosynthesis system
Matemadombo, Fungisai, Puig, Sebastià, Ganigué, Ramon, Ramírez-García, Robert, Batlle-Vilanova, Pau, Dolors Balaguer, Marilós and Colprim, Jesús (2017). Modelling the simultaneous production and separation of acetic acid from CO2 using an anion exchange membrane microbial electrosynthesis system. Journal of Chemical Technology and Biotechnology, 92 (6), 1211-1217. doi: 10.1002/jctb.5110
2017
Journal Article
Tracking bio-hydrogen-mediated production of commodity chemicals from carbon dioxide and renewable electricity
Puig, Sebastià, Ganigué, Ramon, Batlle-Vilanova, Pau, Balaguer, M. Dolors, Bañeras, Lluís and Colprim, Jesús (2017). Tracking bio-hydrogen-mediated production of commodity chemicals from carbon dioxide and renewable electricity. Bioresource Technology, 228, 201-209. doi: 10.1016/j.biortech.2016.12.035
2016
Journal Article
Online control of magnesium hydroxide dosing for sulfide mitigation in sewers: algorithm development, simulation analysis, and field validation
Ganigue, Ramon, Jiang, Guangming, Sharma, Keshab, Chen, Jindong, Vuong, Lam and Yuan, Zhiguo (2016). Online control of magnesium hydroxide dosing for sulfide mitigation in sewers: algorithm development, simulation analysis, and field validation. Journal of Environmental Engineering, 142 (12) 04016069, 04016069. doi: 10.1061/(ASCE)EE.1943-7870.0001151
2016
Journal Article
Event-driven model predictive control of sewage pumping stations for sulfide mitigation in sewer networks
Liu, Yiqi, Ganigue, Ramon, Sharma, Keshab and Yuan, Zhiguo (2016). Event-driven model predictive control of sewage pumping stations for sulfide mitigation in sewer networks. Water Research, 98, 376-383. doi: 10.1016/j.watres.2016.04.039
Funding
Past funding
Supervision
Availability
- Dr Ramon Ganigue is:
- Available for supervision
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Available projects
-
Engineering scalable single cell oil production for sustainable manufacturing of oleochemicals
Single cell oils (SCO) production provides a powerful route to generate sustainable oils and oleochemicals from renewable and non-refined feedstocks, decoupling lipid supply from conventional agriculture.
Harnessing the metabolic capacity of oleaginous microorganisms, SCO systems convert diverse carbon sources into energy-dense triacylglycerols, offering high productivity and flexibility compared to traditional oil crops.
However, maximising lipid yields while maintaining process efficiency and scalability remains a central challenge, requiring an integrated understanding of microbial metabolism and bioprocess operation.
This PhD project will address these challenges by developing advanced SCO production strategies that optimise carbon partitioning, process performance, and industrial feasibility.
-
Engineering scalable microbial protein production from sustainable feedstocks
Microbial protein (MP) production offers a promising route to decouple protein supply from conventional agriculture, enabling sustainable, high-efficiency conversion of renewable feedstocks into nutritious biomass.
Leveraging the metabolic versatility of microorganisms, MP systems can valorise low-value and non-refined resources into high-quality protein, contributing to circular and low-carbon manufacturing.
However, achieving both high productivity and desirable protein quality remains a key challenge, requiring an integrated approach that combines microbial physiology, process engineering, and bioprocess intensification.
This PhD project will address these challenges by developing next-generation MP production strategies that balance growth performance, product quality, and process scalability for industrial deployment.
Media
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