Overview
Background
Biography
Senior Lecturer Dr Ramon Ganigué leads a research program on microbial biotechnologies for sustainable manufacturing, addressing critical challenges such as climate change and circular resource management for the benefit of people and planet.
He obtained his PhD in Environmental Engineering from the University of Girona, Spain. Prior to joining The University of Queensland (UQ), Ramon held academic and research positions across Europe and Australia, including Assistant Professor (2017–2022) and Associate Professor (2022–2026) in the Department of Biotechnology at Ghent University, Belgium, alongside postdoctoral appointments at Ghent University, the University of Girona, and UQ.
He has published over 100 peer‑reviewed articles and established extensive international collaborations spanning Europe, Australia, China, and North America. Ramon has led multiple large-scale, multi-partner research projects and, over the past five years, has secured approximately AUD 10 million in competitive European funding to support his team’s activities. In 2024, he was appointed Associate Editor of Frontiers in Bioprocess Engineering.
Research
Vision: To harness the diversity and functionality of microbial systems to enable sustainable, circular manufacturing processes that decouple production from fossil resources and support the transition to a net-zero bioeconomy.
Mission: To engineer robust, scalable microbial bioprocesses that convert complex, non-refined feedstocks into high-value products for the benefit of people and planet. His team integrates microbial physiology, community engineering, and process design to unlock the potential of non-model microorganisms and microbiomes, while developing intensified and industrially relevant bioprocess platforms.
Dr Ramon Ganigué’s research lies at the intersection of microbial biotechnology, chemical engineering, and sustainability, with a focus on engineering microbial bioprocesses for sustainable production systems. His team applies an integrated toolbox spanning microbial physiology, community engineering, metabolic and process modelling, and bioprocess intensification to develop next-generation biotechnologies.
Central to this approach is a deep understanding of microbial physiology and metabolism. The research places particular emphasis on non-model microorganisms, including anaerobes, extremophiles, and complex microbiomes, which offer unique and underexploited capabilities for sustainable bioproduction. These systems are leveraged to convert non-refined and complex feedstocks into value-added products, such as biochemicals, biofuels, bioplastics, and alternative proteins.
A key focus of the program is addressing the operational and engineering challenges that limit industrial deployment. This includes the development of continuous, intensified, and non-axenic bioprocesses, as well as innovative reactor configurations designed to enhance robustness, efficiency, and scalability. Through this integrated approach, the research aims to bridge the gap between fundamental microbiology and industrial application, enabling practical and scalable solutions for sustainable manufacturing.
While sustainable biomanufacturing remains a core focus, the group actively explores the application of its microbial biotechnology toolbox to other systems and challenges aligned with sustainability goals for people and planet.
Teaching & learning contributions
Ramon is an experienced educator contributing across undergraduate and postgraduate programs. He currently lectures in key courses including Principles of Biomedical and Bioprocess Engineering (BIOE1001), Environmental Systems (ENVE2501), and the capstone Process Engineering Design Project (CHEE4001). He is also co-editor of the 2024 IWA Scientific Book Resource Recovery from Water: Principles and Application, and has contributed to MOOCs on resource recovery from wastewater and carbon capture and utilisation technologies.
Availability
- Dr Ramon Ganigue is:
- Available for supervision
Fields of research
Qualifications
- Bachelor of Environmental Sciences, Universitat de Girona
- Masters (Research) of Environmental Biotechnology, Universitat de Girona
- Doctor of Philosophy, Universitat de Girona
Works
Search Professor Ramon Ganigue’s works on UQ eSpace
2023
Journal Article
Production of calcium carbonate-precipitating biomass powder as self-healing additive in concrete and performance evaluation in mortar
Zhu, Xuejiao, Sakarika, Myrsini, Ganigue, Ramon, Van Tittelboom, Kim, Ersan, Yusuf Cagatay, Boon, Nico and De Belie, Nele (2023). Production of calcium carbonate-precipitating biomass powder as self-healing additive in concrete and performance evaluation in mortar. Cement and Concrete Composites, 138 104952, 1-16. doi: 10.1016/j.cemconcomp.2023.104952
2023
Journal Article
Understanding the role of polyurethane sponges on rapid formation of aerobic granular sludge and enhanced nitrogen removal
Zou, Jinte, Yang, Jiaqi, Yu, Fengfan, Cai, Lei, Li, Jun and Ganigue, Ramon (2023). Understanding the role of polyurethane sponges on rapid formation of aerobic granular sludge and enhanced nitrogen removal. Chemical Engineering Journal, 460 141670, 1-11. doi: 10.1016/j.cej.2023.141670
2023
Journal Article
Thermophilic caproic acid production from grass juice by sugar-based chain elongation
Sakarika, Myrsini, Regueira, Alberte, Rabaey, Korneel and Ganigue, Ramon (2023). Thermophilic caproic acid production from grass juice by sugar-based chain elongation. Science of the Total Environment, 860 160501, 1-11. doi: 10.1016/j.scitotenv.2022.160501
2022
Journal Article
Optimization of RNA extraction for bacterial whole transcriptome studies of low-biomass samples
Verbeelen, Tom, Houdt, Rob Van, Leys, Natalie, Ganigue, Ramon and Mastroleo, Felice (2022). Optimization of RNA extraction for bacterial whole transcriptome studies of low-biomass samples. Iscience, 25 (11) 105311, 105311. doi: 10.1016/j.isci.2022.105311
2022
Journal Article
Ammonia oxidation by novel<i> ?Candidatus</i> Nitrosacidococcus urinae? is sensitive to process disturbances at low pH and to iron limitation at neutral pH
Faust, Valentin, van Alen, Theo A., Op den Camp, Huub J. M., Vlaeminck, Siegfried E., Ganigue, Ramon, Boon, Nico and Udert, Kai M. (2022). Ammonia oxidation by novel ?Candidatus Nitrosacidococcus urinae? is sensitive to process disturbances at low pH and to iron limitation at neutral pH. Water Research X, 17 100157, 100157. doi: 10.1016/j.wroa.2022.100157
2022
Journal Article
Nitrous Oxide Emissions and Carbon Footprint of Decentralized Urine Fertilizer Production by Nitrification and Distillation
Faust, Valentin, Gruber, Wenzel, Ganigue, Ramon, Vlaeminck, Siegfried E. and Udert, Kai M. (2022). Nitrous Oxide Emissions and Carbon Footprint of Decentralized Urine Fertilizer Production by Nitrification and Distillation. Acs Es&T Engineering, 2 (9), 1745-1755. doi: 10.1021/acsestengg.2c00082
2022
Journal Article
Editorial: Microbial Chain Elongation-Close the Carbon Loop by Connecting-Communities
Strik, David P. B. T. B., Ganigue, Ramon and Angenent, Largus T. (2022). Editorial: Microbial Chain Elongation-Close the Carbon Loop by Connecting-Communities. Frontiers in Bioengineering and Biotechnology, 10 894490. doi: 10.3389/fbioe.2022.894490
2022
Journal Article
High-rate conversion of lactic acid-rich streams to caproic acid in a fermentative granular system
Marien, Quinten, Ulcar, Barbara, Verleyen, Jesper, Vanthuyne, Benjamin and Ganigue, Ramon (2022). High-rate conversion of lactic acid-rich streams to caproic acid in a fermentative granular system. Bioresource Technology, 355 127250. doi: 10.1016/j.biortech.2022.127250
2022
Journal Article
Substrate loading and nutrient composition steer caproic acid production and biofilm aggregation in high-rate granular reactors
Marien, Quinten, Candry, Pieter, Hendriks, Eline, Carvajal-Arroyo, Jose Maria and Ganigue, Ramon (2022). Substrate loading and nutrient composition steer caproic acid production and biofilm aggregation in high-rate granular reactors. Journal of Environmental Chemical Engineering, 10 (3) 107727. doi: 10.1016/j.jece.2022.107727
2022
Journal Article
Towards new carbon–neutral food systems: combining carbon capture and utilization with microbial protein production
Van Peteghem, L., Sakarika, M., Matassa, S., Pikaar, I., Ganigué, R. and Rabaey, K. (2022). Towards new carbon–neutral food systems: combining carbon capture and utilization with microbial protein production. Bioresource Technology, 349 126853, 126853. doi: 10.1016/j.biortech.2022.126853
2022
Journal Article
Pre-incubation conditions determine the fermentation pattern and microbial community structure in fermenters at mild hydrostatic pressure
Ceron-Chafla, Pamela, Garcia-Timermans, Cristina, de Vrieze, Jo, Ganigue, Ramon, Boon, Nico, Rabaey, Korneel, van Lier, Jules B. and Lindeboom, Ralph E. F. (2022). Pre-incubation conditions determine the fermentation pattern and microbial community structure in fermenters at mild hydrostatic pressure. Biotechnology and Bioengineering, 119 (7), 1792-1807. doi: 10.1002/bit.28085
2022
Book Chapter
Upscaled and validated technologies for the production of bio-based materials from wastewater
Akyol, Çağrı, Ozbayram, E. Gozde, Eusebi, Anna Laura, Foglia, Alessia, Cipolletta, Giulia, Frison, Nicola, Conca, Vincenzo, Da Ros, Cinzia, Wessels, Coos, Ganigué, Ramon, Pikaar, Ilje, Oehmen, Adrian, Carvalho, Gilda and Fatone, Francesco (2022). Upscaled and validated technologies for the production of bio-based materials from wastewater. Resource Recovery from Water. (pp. 197-222) edited by Ilje Pikaar, Jeremy Guest, Ramon Ganigué, Paul Jensen, Korneel Rabaey, Thomas Seviour, John Trimmer, Olaf van der Kolk, Céline Vaneeckhaute and Willy Verstraete. London, United Kingdom: IWA Publishing. doi: 10.2166/9781780409566_0197
2022
Journal Article
Production of microbial protein from fermented grass
Sakarika, Myrsini, Delmoitie, Brecht, Ntagia, Eleftheria, Chatzigiannidou, Ioanna, Gabet, Xavier, Ganigue, Ramon and Rabaey, Korneel (2022). Production of microbial protein from fermented grass. Chemical Engineering Journal, 433 133631. doi: 10.1016/j.cej.2021.133631
2022
Journal Article
Methylotrophs: from C1 compounds to food
Sakarika, Myrsini, Ganigue, Ramon and Rabaey, Korneel (2022). Methylotrophs: from C1 compounds to food. Current Opinion in Biotechnology, 75 102685, 102685. doi: 10.1016/j.copbio.2022.102685
2021
Journal Article
Development of Nitrogen Recycling Strategies for Bioregenerative Life Support Systems in Space
Verbeelen, Tom, Leys, Natalie, Ganigue, Ramon and Mastroleo, Felice (2021). Development of Nitrogen Recycling Strategies for Bioregenerative Life Support Systems in Space. Frontiers in Microbiology, 12 700810. doi: 10.3389/fmicb.2021.700810
2021
Journal Article
Electrochemical in situ pH control enables chemical-free full urine nitrification with concomitant nitrate extraction
De Paepe, Jolien, Clauwaert, Peter, Gritti, Maria Celeste, Ganigue, Ramon, Sas, Benedikt, Vlaeminck, Siegfried E. and Rabaey, Korneel (2021). Electrochemical in situ pH control enables chemical-free full urine nitrification with concomitant nitrate extraction. Environmental Science & Technology, 55 (12), 8287-8298. doi: 10.1021/acs.est.1c00041
2021
Journal Article
Production and extraction of medium chain carboxylic acids at a semi-pilot scale
Carvajal-Arroyo, Jose Maria, Andersen, Stephen J., Ganigue, Ramon, Rozendal, Rene A., Angenent, Largus T. and Rabaey, Korneel (2021). Production and extraction of medium chain carboxylic acids at a semi-pilot scale. Chemical Engineering Journal, 416 127886. doi: 10.1016/j.cej.2020.127886
2021
Journal Article
Chain elongators, friends, and foes
Candry, Pieter and Ganigue, Ramon (2021). Chain elongators, friends, and foes. Current Opinion in Biotechnology, 67, 99-110. doi: 10.1016/j.copbio.2021.01.005
2021
Journal Article
Biochar and activated carbon enhance ethanol conversion and selectivity to caproic acid by Clostridium kluyveri
Ghysels, Stef, Buffel, Sara, Rabaey, Korneel, Ronsse, Frederik and Ganigue, Ramon (2021). Biochar and activated carbon enhance ethanol conversion and selectivity to caproic acid by Clostridium kluyveri. Bioresource Technology, 319 124236, 1-10. doi: 10.1016/j.biortech.2020.124236
2020
Journal Article
Production of isobutyric acid from methanol by <i>Clostridium luticellarii</i>
Petrognani, Camille, Boon, Nico and Ganigue, Ramon (2020). Production of isobutyric acid from methanol by Clostridium luticellarii. Green Chemistry, 22 (23), 8389-8402. doi: 10.1039/d0gc02700f
Funding
Past funding
Supervision
Availability
- Dr Ramon Ganigue is:
- Available for supervision
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Available projects
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Engineering scalable single cell oil production for sustainable manufacturing of oleochemicals
Single cell oils (SCO) production provides a powerful route to generate sustainable oils and oleochemicals from renewable and non-refined feedstocks, decoupling lipid supply from conventional agriculture.
Harnessing the metabolic capacity of oleaginous microorganisms, SCO systems convert diverse carbon sources into energy-dense triacylglycerols, offering high productivity and flexibility compared to traditional oil crops.
However, maximising lipid yields while maintaining process efficiency and scalability remains a central challenge, requiring an integrated understanding of microbial metabolism and bioprocess operation.
This PhD project will address these challenges by developing advanced SCO production strategies that optimise carbon partitioning, process performance, and industrial feasibility.
-
Engineering scalable microbial protein production from sustainable feedstocks
Microbial protein (MP) production offers a promising route to decouple protein supply from conventional agriculture, enabling sustainable, high-efficiency conversion of renewable feedstocks into nutritious biomass.
Leveraging the metabolic versatility of microorganisms, MP systems can valorise low-value and non-refined resources into high-quality protein, contributing to circular and low-carbon manufacturing.
However, achieving both high productivity and desirable protein quality remains a key challenge, requiring an integrated approach that combines microbial physiology, process engineering, and bioprocess intensification.
This PhD project will address these challenges by developing next-generation MP production strategies that balance growth performance, product quality, and process scalability for industrial deployment.
Media
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