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Dr

Ramon Ganigue

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Overview

Background

Biography

Senior Lecturer Dr Ramon Ganigué leads a research program on microbial biotechnologies for sustainable manufacturing, addressing critical challenges such as climate change and circular resource management. He obtained his PhD in Environmental Engineering from the University of Girona, Spain.

Prior to joining The University of Queensland (UQ), Ramon held academic and research positions across Europe and Australia, including Assistant Professor (2017–2022) and Associate Professor (2022–2026) in the Department of Biotechnology at Ghent University, Belgium, alongside postdoctoral appointments at Ghent University, the University of Girona, and UQ.

He has published over 100 peer‑reviewed articles and established extensive international collaborations spanning Europe, Australia, China, and North America. Ramon has led multiple large-scale, multi-partner research projects and, over the past five years, has secured approximately AUD 10 million in competitive European funding to support his team’s activities. In 2024, he was appointed Associate Editor of Frontiers in Bioprocess Engineering.

Research

Vision: To harness the diversity and functionality of microbial systems to enable sustainable, circular manufacturing processes that decouple production from fossil resources and support the transition to a net-zero bioeconomy.

Mission: To engineer robust, scalable microbial bioprocesses that convert complex, non-refined feedstocks into high-value products. We integrate microbial physiology, community engineering, and process design to unlock the potential of non-model microorganisms and microbiomes, while developing intensified and industrially relevant bioprocess platforms.

Dr Ramon Ganigué’s research lies at the intersection of microbial biotechnology, chemical engineering, and sustainability, with a focus on engineering microbial bioprocesses for sustainable production systems. His team applies an integrated toolbox spanning microbial physiology, community engineering, metabolic and process modelling, and bioprocess intensification to develop next-generation biotechnologies.

Central to this approach is a deep understanding of microbial physiology and metabolism. The research places particular emphasis on non-model microorganisms, including anaerobes, extremophiles, and complex microbiomes, which offer unique and underexploited capabilities for sustainable bioproduction. These systems are leveraged to convert non-refined and complex feedstocks into value-added products, such as biochemicals, biofuels, bioplastics, and alternative proteins.

A key focus of the program is addressing the operational and engineering challenges that limit industrial deployment. This includes the development of continuous, intensified, and non-axenic bioprocesses, as well as innovative reactor configurations designed to enhance robustness, efficiency, and scalability. Through this integrated approach, the research aims to bridge the gap between fundamental microbiology and industrial application, enabling practical and scalable solutions for sustainable manufacturing.

Teaching & learning contributions

Ramon is an experienced educator contributing across undergraduate and postgraduate programs. He currently lectures in key courses including Principles of Biomedical and Bioprocess Engineering (BIOE1001), Environmental Systems (ENVE2501), and the capstone Process Engineering Design Project (CHEE4001). He is also co-editor of the 2024 IWA Scientific Book Resource Recovery from Water: Principles and Application, and has contributed to MOOCs on resource recovery from wastewater and carbon capture and utilisation technologies.

Availability

Dr Ramon Ganigue is:
Available for supervision

Qualifications

  • Doctor of Philosophy, Universitat de Girona

Works

Search Professor Ramon Ganigue’s works on UQ eSpace

99 works between 2007 and 2026

21 - 40 of 99 works

2024

Journal Article

Radiotolerance of N-cycle bacteria and their transcriptomic response to low-dose space-analogue ionizing irradiation

Verbeelen, Tom, Fernandez, Celia Alvarez, Nguyen, Thanh Huy, Gupta, Surya, Leroy, Baptiste, Wattiez, Ruddy, Vlaeminck, Siegfried E., Leys, Natalie, Ganigue, Ramon and Mastroleo, Felice (2024). Radiotolerance of N-cycle bacteria and their transcriptomic response to low-dose space-analogue ionizing irradiation. iScience, 27 (5) 109596, 1-20. doi: 10.1016/j.isci.2024.109596

Radiotolerance of N-cycle bacteria and their transcriptomic response to low-dose space-analogue ionizing irradiation

2024

Journal Article

Why do lactic acid bacteria thrive in chain elongation microbiomes?

Ulcar, Barbara, Regueira, Alberte, Podojstersek, Maja, Boon, Nico and Ganigue, Ramon (2024). Why do lactic acid bacteria thrive in chain elongation microbiomes?. Frontiers in Bioengineering and Biotechnology, 11 1291007, 1-17. doi: 10.3389/fbioe.2023.1291007

Why do lactic acid bacteria thrive in chain elongation microbiomes?

2024

Journal Article

Whole transcriptome analysis highlights nutrient limitation of nitrogen cycle bacteria in simulated microgravity

Verbeelen, Tom, Fernandez, Celia Alvarez, Nguyen, Thanh Huy, Gupta, Surya, Aarts, Raf, Tabury, Kevin, Leroy, Baptiste, Wattiez, Ruddy, Vlaeminck, Siegfried E., Leys, Natalie, Ganigue, Ramon and Mastroleo, Felice (2024). Whole transcriptome analysis highlights nutrient limitation of nitrogen cycle bacteria in simulated microgravity. npj Microgravity, 10 (1) 3, 1-19. doi: 10.1038/s41526-024-00345-z

Whole transcriptome analysis highlights nutrient limitation of nitrogen cycle bacteria in simulated microgravity

2024

Journal Article

Steerable isobutyric and butyric acid production from CO2 and H2 by Clostridium luticellarii

Marien, Quinten, Regueira, Alberte and Ganigue, Ramon (2024). Steerable isobutyric and butyric acid production from CO2 and H2 by Clostridium luticellarii. Microbial Biotechnology, 17 (1) e14321, 1-16. doi: 10.1111/1751-7915.14321

Steerable isobutyric and butyric acid production from CO2 and H2 by Clostridium luticellarii

2023

Journal Article

Influence of pH on urine nitrification: Community shifts of ammonia-oxidizing bacteria and inhibition of nitrite-oxidizing bacteria

Faust, Valentin, Vlaeminck, Siegfried E., Ganigue, Ramon and Udert, Kai M. (2023). Influence of pH on urine nitrification: Community shifts of ammonia-oxidizing bacteria and inhibition of nitrite-oxidizing bacteria. ACS ES&T Engineering, 4 (2), 342-353. doi: 10.1021/acsestengg.3c00320

Influence of pH on urine nitrification: Community shifts of ammonia-oxidizing bacteria and inhibition of nitrite-oxidizing bacteria

2023

Journal Article

Trophic interactions shape the spatial organization of medium-chain carboxylic acid producing granular biofilm communities

Candry, Pieter, Chadwick, Grayson L., Caravajal-Arroyo, Jose Maria, Lacoere, Tim, Winkler, Mari-Karoliina Henriikka, Ganigue, Ramon, Orphan, Victoria J. and Rabaey, Korneel (2023). Trophic interactions shape the spatial organization of medium-chain carboxylic acid producing granular biofilm communities. ISME Journa, 17 (11), 2014-2022. doi: 10.1038/s41396-023-01508-8

Trophic interactions shape the spatial organization of medium-chain carboxylic acid producing granular biofilm communities

2023

Journal Article

Optimizing control strategies for urine nitrification: narrow pH control band enhances process stability and reduces nitrous oxide emissions

Faust, Valentin, Boon, Nico, Ganigue, Ramon, Vlaeminck, Siegfried E. and Udert, Kai M. (2023). Optimizing control strategies for urine nitrification: narrow pH control band enhances process stability and reduces nitrous oxide emissions. Frontiers in Environmental Science, 11 1275152, 1-14. doi: 10.3389/fenvs.2023.1275152

Optimizing control strategies for urine nitrification: narrow pH control band enhances process stability and reduces nitrous oxide emissions

2023

Journal Article

RNA extraction protocol from low-biomass bacterial Nitrosomonas europaea and Nitrobacter winogradskyi cultures for whole transcriptome studies

Verbeelen, Tom, Van Houdt, Rob, Leys, Natalie, Ganigue, Ramon and Mastroleo, Felice (2023). RNA extraction protocol from low-biomass bacterial Nitrosomonas europaea and Nitrobacter winogradskyi cultures for whole transcriptome studies. STAR Protocols, 4 (3) 102358, 1-9. doi: 10.1016/j.xpro.2023.102358

RNA extraction protocol from low-biomass bacterial Nitrosomonas europaea and Nitrobacter winogradskyi cultures for whole transcriptome studies

2023

Journal Article

Predicting the performance of chain elongating microbiomes through flow cytometric fingerprinting

Sabbe, Kevin, D'Haen, Liese, Boon, Nico and Ganigu, Ramon (2023). Predicting the performance of chain elongating microbiomes through flow cytometric fingerprinting. Water Research, 243 120323, 1-11. doi: 10.1016/j.watres.2023.120323

Predicting the performance of chain elongating microbiomes through flow cytometric fingerprinting

2023

Journal Article

Plant and microbial science and technology as cornerstones to Bioregenerative Life Support Systems in space

De Micco, Veronica, Amitrano, Chiara, Mastroleo, Felice, Aronne, Giovanna, Battistelli, Alberto, Carnero-Diaz, Eugenie, De Pascale, Stefania, Detrell, Gisela, Dussap, Claude-Gilles, Ganigue, Ramon, Jakobsen, Oyvind Mejdell, Poulet, Lucie, Van Houdt, Rob, Verseux, Cyprien, Vlaeminck, Siegfried E., Willaert, Ronnie and Leys, Natalie (2023). Plant and microbial science and technology as cornerstones to Bioregenerative Life Support Systems in space. npj Microgravity, 9 (1) 69, 1-12. doi: 10.1038/s41526-023-00317-9

Plant and microbial science and technology as cornerstones to Bioregenerative Life Support Systems in space

2023

Journal Article

Methylotrophs: from C1 compounds to food (vol 75, 102685,2022)

Sakarika, Myrsini, Ganigue, Ramon and Rabaey, Korneel (2023). Methylotrophs: from C1 compounds to food (vol 75, 102685,2022). Current Opinion in Biotechnology, 82 102964. doi: 10.1016/j.copbio.2023.102964

Methylotrophs: from C1 compounds to food (vol 75, 102685,2022)

2023

Journal Article

Production of calcium carbonate-precipitating biomass powder as self-healing additive in concrete and performance evaluation in mortar

Zhu, Xuejiao, Sakarika, Myrsini, Ganigue, Ramon, Van Tittelboom, Kim, Ersan, Yusuf Cagatay, Boon, Nico and De Belie, Nele (2023). Production of calcium carbonate-precipitating biomass powder as self-healing additive in concrete and performance evaluation in mortar. Cement and Concrete Composites, 138 104952, 1-16. doi: 10.1016/j.cemconcomp.2023.104952

Production of calcium carbonate-precipitating biomass powder as self-healing additive in concrete and performance evaluation in mortar

2023

Journal Article

Understanding the role of polyurethane sponges on rapid formation of aerobic granular sludge and enhanced nitrogen removal

Zou, Jinte, Yang, Jiaqi, Yu, Fengfan, Cai, Lei, Li, Jun and Ganigue, Ramon (2023). Understanding the role of polyurethane sponges on rapid formation of aerobic granular sludge and enhanced nitrogen removal. Chemical Engineering Journal, 460 141670, 1-11. doi: 10.1016/j.cej.2023.141670

Understanding the role of polyurethane sponges on rapid formation of aerobic granular sludge and enhanced nitrogen removal

2023

Journal Article

Thermophilic caproic acid production from grass juice by sugar-based chain elongation

Sakarika, Myrsini, Regueira, Alberte, Rabaey, Korneel and Ganigue, Ramon (2023). Thermophilic caproic acid production from grass juice by sugar-based chain elongation. Science of the Total Environment, 860 160501, 1-11. doi: 10.1016/j.scitotenv.2022.160501

Thermophilic caproic acid production from grass juice by sugar-based chain elongation

2022

Journal Article

Optimization of RNA extraction for bacterial whole transcriptome studies of low-biomass samples

Verbeelen, Tom, Houdt, Rob Van, Leys, Natalie, Ganigue, Ramon and Mastroleo, Felice (2022). Optimization of RNA extraction for bacterial whole transcriptome studies of low-biomass samples. Iscience, 25 (11) 105311, 105311. doi: 10.1016/j.isci.2022.105311

Optimization of RNA extraction for bacterial whole transcriptome studies of low-biomass samples

2022

Journal Article

Ammonia oxidation by novel<i> ?Candidatus</i> Nitrosacidococcus urinae? is sensitive to process disturbances at low pH and to iron limitation at neutral pH

Faust, Valentin, van Alen, Theo A., Op den Camp, Huub J. M., Vlaeminck, Siegfried E., Ganigue, Ramon, Boon, Nico and Udert, Kai M. (2022). Ammonia oxidation by novel ?Candidatus Nitrosacidococcus urinae? is sensitive to process disturbances at low pH and to iron limitation at neutral pH. Water Research X, 17 100157, 100157. doi: 10.1016/j.wroa.2022.100157

Ammonia oxidation by novel<i> ?Candidatus</i> Nitrosacidococcus urinae? is sensitive to process disturbances at low pH and to iron limitation at neutral pH

2022

Journal Article

Nitrous Oxide Emissions and Carbon Footprint of Decentralized Urine Fertilizer Production by Nitrification and Distillation

Faust, Valentin, Gruber, Wenzel, Ganigue, Ramon, Vlaeminck, Siegfried E. and Udert, Kai M. (2022). Nitrous Oxide Emissions and Carbon Footprint of Decentralized Urine Fertilizer Production by Nitrification and Distillation. Acs Es&T Engineering, 2 (9), 1745-1755. doi: 10.1021/acsestengg.2c00082

Nitrous Oxide Emissions and Carbon Footprint of Decentralized Urine Fertilizer Production by Nitrification and Distillation

2022

Journal Article

Editorial: Microbial Chain Elongation-Close the Carbon Loop by Connecting-Communities

Strik, David P. B. T. B., Ganigue, Ramon and Angenent, Largus T. (2022). Editorial: Microbial Chain Elongation-Close the Carbon Loop by Connecting-Communities. Frontiers in Bioengineering and Biotechnology, 10 894490. doi: 10.3389/fbioe.2022.894490

Editorial: Microbial Chain Elongation-Close the Carbon Loop by Connecting-Communities

2022

Journal Article

High-rate conversion of lactic acid-rich streams to caproic acid in a fermentative granular system

Marien, Quinten, Ulcar, Barbara, Verleyen, Jesper, Vanthuyne, Benjamin and Ganigue, Ramon (2022). High-rate conversion of lactic acid-rich streams to caproic acid in a fermentative granular system. Bioresource Technology, 355 127250. doi: 10.1016/j.biortech.2022.127250

High-rate conversion of lactic acid-rich streams to caproic acid in a fermentative granular system

2022

Journal Article

Substrate loading and nutrient composition steer caproic acid production and biofilm aggregation in high-rate granular reactors

Marien, Quinten, Candry, Pieter, Hendriks, Eline, Carvajal-Arroyo, Jose Maria and Ganigue, Ramon (2022). Substrate loading and nutrient composition steer caproic acid production and biofilm aggregation in high-rate granular reactors. Journal of Environmental Chemical Engineering, 10 (3) 107727. doi: 10.1016/j.jece.2022.107727

Substrate loading and nutrient composition steer caproic acid production and biofilm aggregation in high-rate granular reactors

Funding

Past funding

  • 2012
    Understanding biological transformations in sewer sediments
    UQ Early Career Researcher
    Open grant
  • 2010 - 2011
    Impact of oxygen on methane production in sewer systems
    UQ New Staff Research Start-Up Fund
    Open grant

Supervision

Availability

Dr Ramon Ganigue is:
Available for supervision

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Media

Enquiries

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