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Dr

Ramon Ganigue

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Overview

Background

Biography

Senior Lecturer Dr Ramon Ganigué leads a research program on microbial biotechnologies for sustainable manufacturing, addressing critical challenges such as climate change and circular resource management. He obtained his PhD in Environmental Engineering from the University of Girona, Spain.

Prior to joining The University of Queensland (UQ), Ramon held academic and research positions across Europe and Australia, including Assistant Professor (2017–2022) and Associate Professor (2022–2026) in the Department of Biotechnology at Ghent University, Belgium, alongside postdoctoral appointments at Ghent University, the University of Girona, and UQ.

He has published over 100 peer‑reviewed articles and established extensive international collaborations spanning Europe, Australia, China, and North America. Ramon has led multiple large-scale, multi-partner research projects and, over the past five years, has secured approximately AUD 10 million in competitive European funding to support his team’s activities. In 2024, he was appointed Associate Editor of Frontiers in Bioprocess Engineering.

Research

Vision: To harness the diversity and functionality of microbial systems to enable sustainable, circular manufacturing processes that decouple production from fossil resources and support the transition to a net-zero bioeconomy.

Mission: To engineer robust, scalable microbial bioprocesses that convert complex, non-refined feedstocks into high-value products. We integrate microbial physiology, community engineering, and process design to unlock the potential of non-model microorganisms and microbiomes, while developing intensified and industrially relevant bioprocess platforms.

Dr Ramon Ganigué’s research lies at the intersection of microbial biotechnology, chemical engineering, and sustainability, with a focus on engineering microbial bioprocesses for sustainable production systems. His team applies an integrated toolbox spanning microbial physiology, community engineering, metabolic and process modelling, and bioprocess intensification to develop next-generation biotechnologies.

Central to this approach is a deep understanding of microbial physiology and metabolism. The research places particular emphasis on non-model microorganisms, including anaerobes, extremophiles, and complex microbiomes, which offer unique and underexploited capabilities for sustainable bioproduction. These systems are leveraged to convert non-refined and complex feedstocks into value-added products, such as biochemicals, biofuels, bioplastics, and alternative proteins.

A key focus of the program is addressing the operational and engineering challenges that limit industrial deployment. This includes the development of continuous, intensified, and non-axenic bioprocesses, as well as innovative reactor configurations designed to enhance robustness, efficiency, and scalability. Through this integrated approach, the research aims to bridge the gap between fundamental microbiology and industrial application, enabling practical and scalable solutions for sustainable manufacturing.

Teaching & learning contributions

Ramon is an experienced educator contributing across undergraduate and postgraduate programs. He currently lectures in key courses including Principles of Biomedical and Bioprocess Engineering (BIOE1001), Environmental Systems (ENVE2501), and the capstone Process Engineering Design Project (CHEE4001). He is also co-editor of the 2024 IWA Scientific Book Resource Recovery from Water: Principles and Application, and has contributed to MOOCs on resource recovery from wastewater and carbon capture and utilisation technologies.

Availability

Dr Ramon Ganigue is:
Available for supervision

Qualifications

  • Doctor of Philosophy, Universitat de Girona

Works

Search Professor Ramon Ganigue’s works on UQ eSpace

99 works between 2007 and 2026

1 - 20 of 99 works

2026

Journal Article

Assessment of recycling heat-treatment sidestreams from nucleic acid reduction as a nitrogen source in microbial protein production

Delmoitie, Brecht, Regueira, Alberte, De Wever, Heleen, Ganigue, Ramon and Sakarika, Myrsini (2026). Assessment of recycling heat-treatment sidestreams from nucleic acid reduction as a nitrogen source in microbial protein production. Bioresource Technology Reports, 34 102696, 1-10. doi: 10.1016/j.biteb.2026.102696

Assessment of recycling heat-treatment sidestreams from nucleic acid reduction as a nitrogen source in microbial protein production

2026

Journal Article

Carbohydrate concentration and type drive product selectivity to a mixture of volatile fatty acids or lactic acid in thermophilic mixed-culture fermentation

Vulart, Laia, Izcara, Néstor, Estévez, Ángel, Peiro, Enrique, Gòdia, Francesc and Ganigué, Ramon (2026). Carbohydrate concentration and type drive product selectivity to a mixture of volatile fatty acids or lactic acid in thermophilic mixed-culture fermentation. Applied Microbiology and Biotechnology. doi: 10.1007/s00253-026-13806-0

Carbohydrate concentration and type drive product selectivity to a mixture of volatile fatty acids or lactic acid in thermophilic mixed-culture fermentation

2026

Journal Article

Growth and protein content of Cupriavidus necator on organic acids derived from fermented grey starch

Struk, Martin, Sakarika, Myrsini, Estévez, Ángel, Rabaey, Korneel and Ganigué, Ramon (2026). Growth and protein content of Cupriavidus necator on organic acids derived from fermented grey starch. Applied Microbiology and Biotechnology, 110 (1) 98, 1-14. doi: 10.1007/s00253-026-13780-7

Growth and protein content of Cupriavidus necator on organic acids derived from fermented grey starch

2026

Journal Article

Enhancing carbon capture and utilization: mixotrophic growth of Clostridium luticellarii using methanol and hydrogen for efficient CO2 reduction

Marien, Quinten, Regueira, Alberte, Petrognani, Camille, Scarborough, Matthew and Ganigue, Ramon (2026). Enhancing carbon capture and utilization: mixotrophic growth of Clostridium luticellarii using methanol and hydrogen for efficient CO2 reduction. Bioresource Technology, 444 133886, 1-11. doi: 10.1016/j.biortech.2025.133886

Enhancing carbon capture and utilization: mixotrophic growth of Clostridium luticellarii using methanol and hydrogen for efficient CO2 reduction

2026

Journal Article

Assessing the economic viability, environmental sustainability, and scalability of microbial protein from cheese whey permeate in Europe

Delmoitie, Brecht, Regueira, Alberte, De Wever, Heleen, Ganigue, Ramon and Sakarika, Myrsini (2026). Assessing the economic viability, environmental sustainability, and scalability of microbial protein from cheese whey permeate in Europe. Chemical Engineering Journal, 529 172774, 1-14. doi: 10.1016/j.cej.2026.172774

Assessing the economic viability, environmental sustainability, and scalability of microbial protein from cheese whey permeate in Europe

2026

Journal Article

Dose-response effects of microaeration on thermophilic lignocellulose-based anaerobic digestion: performance, stability and microbial community dynamics

Kozera, Marcin P., Akyol, Cagri, Bouchon, Florent, Ganigue, Ramon, Willems, Bernard, Meers, Erik, Bester, Kai and Moller, Henrik B. (2026). Dose-response effects of microaeration on thermophilic lignocellulose-based anaerobic digestion: performance, stability and microbial community dynamics. Bioresource Technology Reports, 33 102593, 1-12. doi: 10.1016/j.biteb.2026.102593

Dose-response effects of microaeration on thermophilic lignocellulose-based anaerobic digestion: performance, stability and microbial community dynamics

2026

Journal Article

Ecophysiological characterization of thermophilic anammox process: impact of environmental conditions and wastewater constituents on the activity of a novel granular thermophilic anammox culture

Ravikumar, Badri Narayan, Carvajal-Arroyo, José M., Jia, Mingsheng and Ganigué, Ramon (2026). Ecophysiological characterization of thermophilic anammox process: impact of environmental conditions and wastewater constituents on the activity of a novel granular thermophilic anammox culture. Water Research, 292 125402, 125402. doi: 10.1016/j.watres.2026.125402

Ecophysiological characterization of thermophilic anammox process: impact of environmental conditions and wastewater constituents on the activity of a novel granular thermophilic anammox culture

2025

Journal Article

Combined effect of feeding regime and pH on carboxylic acids production in thermophilic mixed-culture fermentation

Vulart, L., Estevez, A., Peiro, E., Godia, F. and Ganigue, R. (2025). Combined effect of feeding regime and pH on carboxylic acids production in thermophilic mixed-culture fermentation. Journal of Environmental Chemical Engineering, 13 (5) 117818, 1-12. doi: 10.1016/j.jece.2025.117818

Combined effect of feeding regime and pH on carboxylic acids production in thermophilic mixed-culture fermentation

2025

Journal Article

To ferment or not to ferment? Evaluating the impact of pre-fermentation of cheese whey permeate on microbial protein production with designed synthetic communities

Delmoitie, Brecht, Regueira, Alberte, De Wever, Heleen, Ganigue, Ramon and Sakarika, Myrsini (2025). To ferment or not to ferment? Evaluating the impact of pre-fermentation of cheese whey permeate on microbial protein production with designed synthetic communities. Journal of Environmental Chemical Engineering, 13 (5) 117831, 1-12. doi: 10.1016/j.jece.2025.117831

To ferment or not to ferment? Evaluating the impact of pre-fermentation of cheese whey permeate on microbial protein production with designed synthetic communities

2025

Journal Article

Impact of temperature on butyric and caproic acid production in lactic acid chain elongation

Sabbe, Kevin, Boon, Nico and Ganigue, Ramon (2025). Impact of temperature on butyric and caproic acid production in lactic acid chain elongation. Journal of Environmental Chemical Engineering, 13 (5) 119152, 1-13. doi: 10.1016/j.jece.2025.119152

Impact of temperature on butyric and caproic acid production in lactic acid chain elongation

2025

Journal Article

Granulation of a planktonic thermophilic anammox culture enables high rate nitrogen removal from warm nitrogen rich wastewater: A proof of concept

Ravikumar, Badri Narayan, Jia, Mingsheng, Geleyn, Charlotte, De Beer, Thomas, Carvajal-Arroyo, Jose M. and Ganigue, Ramon (2025). Granulation of a planktonic thermophilic anammox culture enables high rate nitrogen removal from warm nitrogen rich wastewater: A proof of concept. Chemical Engineering Journal, 519 165529, 1-15. doi: 10.1016/j.cej.2025.165529

Granulation of a planktonic thermophilic anammox culture enables high rate nitrogen removal from warm nitrogen rich wastewater: A proof of concept

2025

Journal Article

Large-sized aerobic granular biofilm: stable biotechnology to improve nitrogen removal and reduce sludge yield

Ma, Haibo, Chen, Sihao, Lv, Linhuan, Ye, Zhou, Yang, Jiaqi, Wang, Binbin, Zou, Jinte, Li, Jun and Ganigue, Ramon (2025). Large-sized aerobic granular biofilm: stable biotechnology to improve nitrogen removal and reduce sludge yield. Bioresource Technology, 429 132543, 1-10. doi: 10.1016/j.biortech.2025.132543

Large-sized aerobic granular biofilm: stable biotechnology to improve nitrogen removal and reduce sludge yield

2025

Journal Article

Characterization of solvents and extractants for selective recovery of n-caproic acid

Fernandez-Blancoa, Carla, Sabbeb, Kevin, Veigaa, Maria C., Kennesa, Christian and Ganigue, Ramon (2025). Characterization of solvents and extractants for selective recovery of n-caproic acid. Separation and Purification Technology, 361 131411, 1-9. doi: 10.1016/j.seppur.2025.131411

Characterization of solvents and extractants for selective recovery of n-caproic acid

2025

Journal Article

Implementation of a Clostridium luticellarii genome-scale model for upgrading syngas fermentations

Scott, William T., Rockx, Siemen, Marien, Quinten, Regueira, Alberte, Candry, Pieter, Ganigue, Ramon, Koehorst, Jasper J. and Schaap, Peter J. (2025). Implementation of a Clostridium luticellarii genome-scale model for upgrading syngas fermentations. Computational and Structural Biotechnology Journal, 27, 649-660. doi: 10.1016/j.csbj.2025.01.013

Implementation of a Clostridium luticellarii genome-scale model for upgrading syngas fermentations

2024

Journal Article

Editorial: Microbial biorefineries for a more sustainable, circular economy

Sakarika, Myrsini, Matassa, Silvio, Carvajal-Arroyo, Jose M. and Ganigue, Ramon (2024). Editorial: Microbial biorefineries for a more sustainable, circular economy. Frontiers in Bioengineering and Biotechnology, 12 1512756. doi: 10.3389/fbioe.2024.1512756

Editorial: Microbial biorefineries for a more sustainable, circular economy

2024

Journal Article

Isobutyric and n-butyric acid production from H2 and CO2 by Clostridium luticellarii in a hollow fiber membrane biofilm reactor: Reactor operation and process modelling

Marien, Quinten, Flores-Alsina, Xavier, Aslam, Umair, Gernaey, Krist V., Regueira, Alberte and Ganigue, Ramon (2024). Isobutyric and n-butyric acid production from H2 and CO2 by Clostridium luticellarii in a hollow fiber membrane biofilm reactor: Reactor operation and process modelling. Chemical Engineering Journal, 495 153216, 1-13. doi: 10.1016/j.cej.2024.153216

Isobutyric and n-butyric acid production from H2 and CO2 by Clostridium luticellarii in a hollow fiber membrane biofilm reactor: Reactor operation and process modelling

2024

Journal Article

Comprehensive comparative study on n-caproate production by Clostridium kluyveri: batch vs. continuous operation modes

Fernandez-Blanco, Carla, Pereira, Alexandra, Veiga, Maria C., Kennes, Christian and Ganigue, Ramon (2024). Comprehensive comparative study on n-caproate production by Clostridium kluyveri: batch vs. continuous operation modes. Bioresource Technology, 408 131138, 1-9. doi: 10.1016/j.biortech.2024.131138

Comprehensive comparative study on n-caproate production by Clostridium kluyveri: batch vs. continuous operation modes

2024

Journal Article

Editorial: Microbial chain elongation-carbon recovering biorefineries for the circular economy

Strik, David P. B. T. B. and Ganigue, Ramon (2024). Editorial: Microbial chain elongation-carbon recovering biorefineries for the circular economy. Frontiers in Bioengineering and Biotechnology, 12 1448975. doi: 10.3389/fbioe.2024.1448975

Editorial: Microbial chain elongation-carbon recovering biorefineries for the circular economy

2024

Journal Article

Conditions for successful nitrogen removal from source-separated urine by partial nitritation/anammox

Faust, Valentin, Markus, Philipp, Schielke-Jenni, Sarina, Timmer, Marijn J., De Paepe, Jolien, Ganigue, Ramon, Vlaeminck, Siegfried E. and Udert, Kai M. (2024). Conditions for successful nitrogen removal from source-separated urine by partial nitritation/anammox. PLoS Water, 3 (5) e0000235, 1-23. doi: 10.1371/journal.pwat.0000235

Conditions for successful nitrogen removal from source-separated urine by partial nitritation/anammox

2024

Journal Article

Resource-efficient nitrogen removal from source-separated urine with partial nitritation/anammox in a membrane-aerated biofilm reactor

Timmer, Marijn J., De Paepe, Jolien, Van Winckel, Tim, Spiller, Marc, Spacova, Irina, De Paepe, Kim, Pintelon, Isabel, Lebeer, Sarah, De Vos, Winnok H., Lasseur, Christophe, Ganigue, Ramon, Udert, Kai M. and Vlaeminck, Siegfried E. (2024). Resource-efficient nitrogen removal from source-separated urine with partial nitritation/anammox in a membrane-aerated biofilm reactor. ACS ES&T Engineering, 4 (7), 1609-1621. doi: 10.1021/acsestengg.4c00058

Resource-efficient nitrogen removal from source-separated urine with partial nitritation/anammox in a membrane-aerated biofilm reactor

Funding

Past funding

  • 2012
    Understanding biological transformations in sewer sediments
    UQ Early Career Researcher
    Open grant
  • 2010 - 2011
    Impact of oxygen on methane production in sewer systems
    UQ New Staff Research Start-Up Fund
    Open grant

Supervision

Availability

Dr Ramon Ganigue is:
Available for supervision

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Media

Enquiries

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communications@uq.edu.au