|
2026 Journal Article Computational modelling of cell identityShim, Woo Jun, Chow, Chris Siu Yeung, Bao, Shaine Chenxin, Zhao, Qiongyi and Palpant, Nathan J. (2026). Computational modelling of cell identity. Biochemical Journal, 483 (6), 1049-1071. doi: 10.1042/bcj20250132 |
|
2026 Journal Article Identifying therapeutic targets in low‐grade serous ovarian carcinomas with no specific molecular profilePishas, Kathleen I, Cowley, Karla J, Marinovic, Evanny, Köbel, Martin, Llaurado‐Fernandez, Marta, Kim, Hannah, Bao, Shaine Chenxin, Mizikovsky, Dalia, Palpant, Nathan J, Shrestha, Raunak, Vary, Robert, Luu, Jennii, Meunier, Liliane, Semple, Timothy, Blancafort, Pilar, Golden, Emily, Cohen, Paul A, Carey, Mark S, Campbell, Ian G, Simpson, Kaylene J and Cheasley, Dane (2026). Identifying therapeutic targets in low‐grade serous ovarian carcinomas with no specific molecular profile. The Journal of Pathology path.70075. doi: 10.1002/path.70075 |
|
2026 Journal Article Preparing healthcare providers to use polygenic risk scores: a qualitative study of learning needs and educational preferencesClark, Amy, Wallingford, Courtney K., Berkman, Jennifer, McInerney-Leo, Aideen, Nisselle, Amy, Terrill, Bronwyn, Palpant, Nathan, Young, Mary-Anne, James, Paul A. and Yanes, Tatiane (2026). Preparing healthcare providers to use polygenic risk scores: a qualitative study of learning needs and educational preferences. BMJ Open, 16 (5) e111898, e111898-5. doi: 10.1136/bmjopen-2025-111898 |
|
2026 Journal Article A scalable, multi-resolution consensus clustering approach for prioritizing robust signals from high-throughput screensBao, Shaine Chenxin, Pishas, Kathleen I, Cowley, Karla J, Zhao, Qiongyi, Goodall, Emily C A, Henderson, Ian R, Liu, Xin, Marinovic, Evanny, Carey, Mark S, Campbell, Ian G, Simpson, Kaylene J, Cheasley, Dane, Mizikovsky, Dalia and Palpant, Nathan J (2026). A scalable, multi-resolution consensus clustering approach for prioritizing robust signals from high-throughput screens. Briefings in Bioinformatics, 27 (3) bbag242. doi: 10.1093/bib/bbag242 |
|
2026 Journal Article Glycaemic variability underlies myocyte dysfunction and myocardial injury risk in diabetesCao, Yuanzhao, Redd, Meredith A., Outhwaite, Jennifer E., Mizikovsky, Dalia, Shim, Woo Jun, Fang, Chen, Vedelago, Courtney, Tan, Clarissa, Wu, Zhixuan, Daygon, Dara, Stark, Terra, Palfreyman, Robin, Chiu, Han Sheng, Thomas, Ulrich, Dragicevic, Elena, Sng, Julian D. J., Saez, Natalie J., Barrett, Helen L., Dorey, Emily S., King, Glenn F., Wuethrich, Alain, Trau, Matt, Shah, Sonia, Short, Kirsty R. and Palpant, Nathan J. (2026). Glycaemic variability underlies myocyte dysfunction and myocardial injury risk in diabetes. Nature Communications. doi: 10.1038/s41467-026-71809-x |
|
2026 Journal Article Bacterial reporter–paired scRNA sequencing reveals cross talk between zinc starvation and zinc toxicity in macrophage antibacterial defensevon Pein, Jessica B., Andersen, Stacey B., Xu, Jon, Phan, Minh-Duy, Dalton, Emma K., Koczerka, Michael, Stocks, Claudia J., Curson, James E. B., Vandeleur, Zoe, Condon, Nicholas D., Hancock, Steven J., Nefzger, Christian M., Palpant, Nathan J., Ramnath, Divya, Kapetanovic, Ronan, Schembri, Mark A. and Sweet, Matthew J. (2026). Bacterial reporter–paired scRNA sequencing reveals cross talk between zinc starvation and zinc toxicity in macrophage antibacterial defense. Proceedings of the National Academy of Sciences, 123 (11) e2530503123, 1-12. doi: 10.1073/pnas.2530503123 |
|
2026 Journal Article The changing landscape of gene expression analysisZhao, Qiongyi, Shen, Sophie, Shim, Woo Jun and Palpant, Nathan J. (2026). The changing landscape of gene expression analysis. Briefings in Bioinformatics, 27 (2) bbag185, 2. doi: 10.1093/bib/bbag185 |
|
2026 Journal Article Human Hearts Intrinsically Increase Cardiomyocyte Mitosis Following Myocardial InfarctionHume, Robert, Warwick, Jessica, Shim, Woo Jun, Malecki, Cassandra, Li, Mengbo, Harney, Dylan, Slaughter, Eugene, Wang, XiaoSuo, Nguyen, Lisa, Cole, Louise, Edelman, James, Rashid, Fairooj, Houlahan, Callum, Gao, Antony, Ferguson, Angela, Chong, James, Larance, Mark, O'Sullivan, John, Palpant, Nathan, Bannon, Paul and Lal, Sean (2026). Human Hearts Intrinsically Increase Cardiomyocyte Mitosis Following Myocardial Infarction. Journal of Molecular and Cellular Cardiology Plus, 15 100505, 100505. doi: 10.1016/j.jmccpl.2025.100505 |
|
2026 Journal Article Hi1a delivered in various modes reduces myocardial infarct size in miceWu, Jianxin, Gao, Ling, Villanueva, Jeanette, Doyle, Aoife, Dutta, Sanjay, Joshi, Yashutosh, MacLean, Campbell, Kesteven, Scott, King, Glenn, Palpant, Nathan, Feneley, Michael, Iismaa, Siiri, Graham, Robert and Macdonald, Peter (2026). Hi1a delivered in various modes reduces myocardial infarct size in mice. Journal of Molecular and Cellular Cardiology Plus, 15 100753, 100753. doi: 10.1016/j.jmccpl.2025.100753 |
|
2026 Journal Article Nanopatterned cell sheet assembly of biomimetic cardiac laminae for modeling structure-function relationshipsJiao, Alex, Macadangdang, Jesse, Kim, Jinsung, Moerk, Charles Travis, Palpant, Nathan J., Mengsteab, Paulos Y., Park, Hyeon-Cheol, Murry, Charles E. and Kim, Deok-Ho (2026). Nanopatterned cell sheet assembly of biomimetic cardiac laminae for modeling structure-function relationships. Biomaterials Research, 30 0339, 1-12. doi: 10.34133/bmr.0339 |
|
2025 Journal Article Conserved facultative heterochromatin across cell types identify regulatory sequences underpinning cell identity and diseaseSinniah, Enakshi, Mizikovsky, Dalia, Shim, Woo Jun, Chow, Chris Siu Yeung, Souilmi, Yassine, Cheng, Fei-Fei, Zeng, Zhili, Laurie, Jordan, Foster, Matthew, Shah, Sonia, Bodén, Mikael, Zeng, Jian, Llamas, Bastien and Palpant, Nathan J. (2025). Conserved facultative heterochromatin across cell types identify regulatory sequences underpinning cell identity and disease. Nucleic Acids Research, 53 (20) gkaf971, 1-23. doi: 10.1093/nar/gkaf971 |
|
2025 Journal Article Epigenomics and transcriptomics profiles of developing zebrafish heart cellsChahal, Gulrez, Eichenlaub, Michael P., Tondl, Markus, Pawlak, Michał, Mohenska, Monika, Grimm, Lin, Bottrell, Lauren, Drvodelic, Mark, Alaei, Sara, Hallab, Jeannette, Waylen, Lisa N., Polo, Jose M., Blanpain, Cédric, Palpant, Nathan, Rossello, Fernando J., Änkö, Minna-Liisa, Currie, Peter D., Hogan, Benjamin M., Winata, Cecilia, Salimova, Ekaterina, Nim, Hieu T. and Ramialison, Mirana (2025). Epigenomics and transcriptomics profiles of developing zebrafish heart cells. Scientific Data, 12 (1) 1620, 1-10. doi: 10.1038/s41597-025-05895-9 |
|
2025 Journal Article A pluripotent stem cell atlas of multilineage differentiationShen, Sophie, Werner, Tessa, Chiu, Han Sheng, Chen, Xiaoli, Nguyen, Quan and Palpant, Nathan J. (2025). A pluripotent stem cell atlas of multilineage differentiation. Scientific Data, 12 (1) 1238, 1238. doi: 10.1038/s41597-025-05549-w |
|
2025 Journal Article Atlas of multilineage stem cell differentiation reveals TMEM88 as a developmental regulator of blood pressureShen, Sophie, Werner, Tessa, Lukowski, Samuel W., Andersen, Stacey, Sun, Yuliangzi, Shim, Woo Jun, Mizikovsky, Dalia, Kobayashi, Sakurako, Outhwaite, Jennifer, Chiu, Han Sheng, Chen, Xiaoli, Chapman, Gavin, Martin, Ella M. M. A., Xia, Di, Pham, Duy, Su, Zezhuo, Kim, Daniel, Yang, Pengyi, Tan, Men Chee, Sinniah, Enakshi, Zhao, Qiongyi, Negi, Sumedha, Redd, Meredith A., Powell, Joseph E., Dunwoodie, Sally L., Tam, Patrick P. L., Bodén, Mikael, Ho, Joshua W. K., Nguyen, Quan and Palpant, Nathan J. (2025). Atlas of multilineage stem cell differentiation reveals TMEM88 as a developmental regulator of blood pressure. Nature Communications, 16 (1) 1356, 1-19. doi: 10.1038/s41467-025-56533-2 |
|
2025 Journal Article Glycaemic variability underlies myocyte dysfunction and myocardial injury risk in diabetesCao, Yuanzhao, Redd, Meredith, Outhwaite, Jennifer, Mizikovsky, Dalia, Shim, Woo Jun, Fang, Chen, Wu, Zhixuan, Daygon, Dara, Stark, Terra, Palfreyman, Robin, Chiu, Han Sheng, Tan, Clarissa, Thomas, Ulrich, Dragicevic, Elena, Sng, Julian, Barrett, Helen, Dorey, Emily, Shah, Sonia, Short, Kirsty and Palpant, Nathan J. (2025). Glycaemic variability underlies myocyte dysfunction and myocardial injury risk in diabetes. doi: 10.1101/2025.01.29.635173 |
|
2025 Journal Article Human hearts intrinsically increase cardiomyocyte mitosis after myocardial infarctionHume, Robert D., Warwick, Jessica, Shim, Woo Jun, Malecki, Cassandra, Li, Mengbo, Seth, Lakshay, Harney, Dylan, Dagher, Julien, Lum, Trina, Tierney, Geraldine, Cooper, Wendy, Slaughter, Eugene, Wang, Xiaosuo, Nguyen, Lisa, Cole, Louise, Edelman, James, Rashid, Fairooj, Houlahan, Callum, Gao, Antony, Ferguson, Angela L., Chong, James J.H., Larance, Mark, O’Sullivan, John, Palpant, Nathan J., Bannon, Paul and Lal, Sean (2025). Human hearts intrinsically increase cardiomyocyte mitosis after myocardial infarction. Circulation Research, 138 (2) e327486, 367-382. doi: 10.1161/circresaha.125.327486 |
|
2025 Journal Article TRIAGE: an R package for regulatory gene analysisZhao, Qiongyi, Shim, Woo Jun, Sun, Yuliangzi, Sinniah, Enakshi, Shen, Sophie, Boden, Mikael and Palpant, Nathan J. (2025). TRIAGE: an R package for regulatory gene analysis. Briefings in Bioinformatics, 26 (1) bbaf004, 1-13. doi: 10.1093/bib/bbaf004 |
|
2024 Journal Article Post-acute sequelae of SARS-CoV-2 cardiovascular symptoms are associated with trace-level cytokines that affect cardiomyocyte functionSinclair, Jane E., Vedelago, Courtney, Ryan, Feargal J., Carney, Meagan, Redd, Meredith A., Lynn, Miriam A., Grubor-Bauk, Branka, Cao, Yuanzhao, Henders, Anjali K., Chew, Keng Yih, Gilroy, Deborah, Greaves, Kim, Labzin, Larisa, Ziser, Laura, Ronacher, Katharina, Wallace, Leanne M., Zhang, Yiwen, Macauslane, Kyle, Ellis, Daniel J., Rao, Sudha, Burr, Lucy, Bain, Amanda, Karawita, Anjana, Schulz, Benjamin L., Li, Junrong, Lynn, David J., Palpant, Nathan, Wuethrich, Alain, Trau, Matt and Short, Kirsty R. (2024). Post-acute sequelae of SARS-CoV-2 cardiovascular symptoms are associated with trace-level cytokines that affect cardiomyocyte function. Nature Microbiology, 9 (12), 1-13. doi: 10.1038/s41564-024-01838-z |
|
2024 Journal Article A community-oriented, data-driven resource to improve protocol design for cardiac modelling from human pluripotent stem cellsChow, Chris Siu Yeung, Negi, Sumedha, Bao, Shaine, Fang, Chen, Hudson, James, Shim, Woo Jun, Yuanzhao Cao and Palpant, Nathan (2024). A community-oriented, data-driven resource to improve protocol design for cardiac modelling from human pluripotent stem cells. doi: 10.1101/2024.09.04.611313 |
|
2024 Journal Article Acid-sensing ion channel 1a blockade reduces myocardial injury in rodent models of myocardial infarctionRedd, Meredith A, Yoshikawa, Yusuke, Khan, Nemat, Waqar, Maleeha, Saez, Natalie J, Outhwaite, Jennifer E, Russell, Jake S, Hanna, Amy D, Chiu, Han S, Er, Sing Yan, Butcher, Neville J, Mardon, Karine, Fraser, John F, Smythe, Mark L, Rash, Lachlan D, Thomas, Walter G, King, Glenn F, Reichelt, Melissa E and Palpant, Nathan J (2024). Acid-sensing ion channel 1a blockade reduces myocardial injury in rodent models of myocardial infarction. European Heart Journal, 45 (17), 1571-1574. doi: 10.1093/eurheartj/ehad793 |
