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2018 Journal Article Microbial diversity and community composition of caecal microbiota in commercial and indigenous Indian chickens determined using 16s rDNA amplicon sequencingPandit, Ramesh J., Hinsu, Ankit T., Patel, Namrata V., Koringa, Prakash G., Jakhesara, Subhash J., Thakkar, Jalpa R., Shah, Tejas M., Limon, Georgina, Psifidi, Androniki, Guitian, Javier, Hume, David A., Tomley, Fiona M., Rank, Dharamshibhai N., Raman, M., Tirumurugaan, K. G., Blake, Damer P. and Joshi, Chaitanya G. (2018). Microbial diversity and community composition of caecal microbiota in commercial and indigenous Indian chickens determined using 16s rDNA amplicon sequencing. Microbiome, 6 (1) 115. doi: 10.1186/s40168-018-0501-9 |
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2018 Journal Article Progression of whole-blood transcriptional signatures from interferon-induced to neutrophil-associated patterns in severe influenzaDunning, Jake, Blankley, Simon, Hoang, Long T., Cox, Mike, Graham, Christine M., James, Philip L., Bloom, Chloe I., Chaussabel, Damien, Banchereau, Jacques, Brett, Stephen J., Habibi, Maximillian S., Johnston, Sebastian L., Hansel, Trevor T., Levin, Mike, Thwaites, Ryan S., Warner, John O., Cookson, William O., Gazzard, Brian G., Hay, Alan, McCauley, John, Aylin, Paul, Ashby, Deborah, Barclay, Wendy S., Elderfield, Ruth A., Nadel, Simon, Herberg, Jethro A., Drumright, Lydia N., Garcia-Alvarez, Laura, Holmes, Alison H. ... Openshaw, Peter J. M. (2018). Progression of whole-blood transcriptional signatures from interferon-induced to neutrophil-associated patterns in severe influenza. Nature Immunology, 19 (6), 625-635. doi: 10.1038/s41590-018-0111-5 |
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2018 Journal Article An update on equine postoperative ileus: definitions, pathophysiology and managementLisowski, Z. M., Pirie, R. S., Blikslager, A. T., Lefebvre, D., Hume, D. A. and Hudson, N. P. H. (2018). An update on equine postoperative ileus: definitions, pathophysiology and management. Equine Veterinary Journal, 50 (3), 292-303. doi: 10.1111/evj.12801 |
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2018 Journal Article Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptomeBush, Stephen J., Muriuki, Charity, McCulloch, Mary E. B., Farquhar, Iseabail L., Clark, Emily L. and Hume, David A. (2018). Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome. Genetics Selection Evolution, 50 (1) 20. doi: 10.1186/s12711-018-0391-0 |
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2018 Journal Article The preterm labor associated ADAMTS2 gene is induced by glucocorticoidsJubb, Alasdair W., Hofer, Thomas P., Hume, David A. and Ziegler-Heitbrock, Loems (2018). The preterm labor associated ADAMTS2 gene is induced by glucocorticoids. American Journal of Obstetrics and Gynecology, 219 (1), 122-123. doi: 10.1016/j.ajog.2018.03.024 |
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2018 Journal Article The role of CSF1R-dependent macrophages in control of the intestinal stem-cell nicheSehgal, Anuj, Donaldson, David S., Pridans, Clare, Sauter, Kristin A., Hume, David A. and Mabbott, Neil A. (2018). The role of CSF1R-dependent macrophages in control of the intestinal stem-cell niche. Nature Communications, 9 (1) 1272, 1272. doi: 10.1038/s41467-018-03638-6 |
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2018 Journal Article Csf1r-mApple transgene expression and ligand binding in vivo reveal dynamics of CSF1R expression within the mononuclear phagocyte systemHawley, Catherine A., Rojo, Rocio, Raper, Anna, Sauter, Kristin A., Lisowski, Zofia M., Grabert, Kathleen, Bain, Calum C., Davis, Gemma M., Louwe, Pieter A., Ostrowski, Michael C., Hume, David A., Pridans, Clare and Jenkins, Stephen J. (2018). Csf1r-mApple transgene expression and ligand binding in vivo reveal dynamics of CSF1R expression within the mononuclear phagocyte system. Journal of Immunology, 200 (6), 2209-2223. doi: 10.4049/jimmunol.1701488 |
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2018 Journal Article Macrophage colony-stimulating factor increases hepatic macrophage content, liver growth, and lipid accumulation in neonatal ratsPridans, Clare, Sauter, Kristin A., Irvine, Katharine M., Davis, Gemma M., Lefevre, Lucas, Raper, Anna, Rojo, Rocio, Nirmal, Ajit J., Beard, Philippa, Cheeseman, Michael and Hume, David A. (2018). Macrophage colony-stimulating factor increases hepatic macrophage content, liver growth, and lipid accumulation in neonatal rats. American Journal of Physiology - Gastrointestinal and Liver Physiology, 314 (3), G388-G398. doi: 10.1152/ajpgi.00343.2017 |
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2018 Journal Article Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human diseaseBaillie, J. Kenneth, Bretherick, Andrew, Haley, Christopher S., Clohisey, Sara, Gray, Alan, Neyton, Lucile P. A., Barrett, Jeffrey, Stahl, Eli A., Tenesa, Albert, Andersson, Robin, Brown, J. Ben, Faulkner, Geoffrey J., Lizio, Marina, Schaefer, Ulf, Daub, Carsten, Itoh, Masayoshi, Kondo, Naoto, Lassmann, Timo, Kawai, Jun, IIBDGC Consortium, Mole, Damian, Bajic, Vladimir B., Heutink, Peter, Rehli, Michael, Kawaji, Hideya, Sandelin, Albin, Suzuki, Harukazu, Satsangi, Jack, Wells, Christine A. ... Hume, David A. (2018). Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease. PL o S Computational Biology, 14 (3) e1005934, e1005934. doi: 10.1371/journal.pcbi.1005934 |
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2018 Journal Article Effects of anti-inflammatory drugs on the expression of tryptophan-metabolism genes by human macrophagesRegan, Tim, Gill, Andrew C., Clohisey, Sara M., Barnett, Mark W., Pariante, Carmine M., Harrison, Neil A., Hume, David A., Bullmore, Edward T. and Freeman, Tom C. (2018). Effects of anti-inflammatory drugs on the expression of tryptophan-metabolism genes by human macrophages. Journal of Leukocyte Biology, 103 (4), 681-692. doi: 10.1002/JLB.3A0617-261R |
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2018 Journal Article Species-specific transcriptional regulation of genes involved in nitric oxide production and arginine metabolism in macrophagesYoung, Rachel, Bush, Stephen J., Lefevre, Lucas, McCulloch, Mary E.B., Lisowski, Zofia M., Muriuki, Charity, Waddell, Lindsey A., Sauter, Kristin A., Pridans, Clare, Clark, Emily L. and Hume, David A. (2018). Species-specific transcriptional regulation of genes involved in nitric oxide production and arginine metabolism in macrophages. ImmunoHorizons, 2 (1), 27-37. doi: 10.4049/immunohorizons.1700073 |
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2018 Journal Article Replicable and coupled changes in innate and adaptive immune gene expression in two case-control studies of blood microarrays in major depressive disorderLeday, Gwenaël G.R., Vértes, Petra E., Richardson, Sylvia, Greene, Jonathan R., Regan, Tim, Khan, Shahid, Henderson, Robbie, Freeman, Tom C., Pariante, Carmine M., Harrison, Neil A., Perry, V. Hugh, Drevets, Wayne C., Wittenberg, Gayle M., Bullmore, Edward T., MRC Immunopsychiatry Consortium, Bullmore, Edward, Vertes, Petra, Cardinal, Rudolf, Richardson, Sylvia, Leday, Gwenael, Freeman, Tom, Regan, Tim, Hume, David, Wu, Zhaozong, Pariante, Carmine, Cattaneo, Annamaria, Zunszain, Patricia, Borsini, Alessandra, Stewart, Robert ... Henderson, Robbie (2018). Replicable and coupled changes in innate and adaptive immune gene expression in two case-control studies of blood microarrays in major depressive disorder. Biological Psychiatry, 83 (1), 70-80. doi: 10.1016/j.biopsych.2017.01.021 |
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2017 Journal Article Glucocorticoid Receptor Binding Induces Rapid and Prolonged Large-Scale Chromatin Decompaction at Multiple Target LociJubb, Alasdair W., Boyle, Shelagh, Hume, David A. and Bickmore, Wendy A. (2017). Glucocorticoid Receptor Binding Induces Rapid and Prolonged Large-Scale Chromatin Decompaction at Multiple Target Loci. Cell Reports, 21 (11), 3022-3031. doi: 10.1016/j.celrep.2017.11.053 |
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2017 Journal Article The evolution of the macrophage-specific enhancer (Fms intronic regulatory element) within the CSF1R locus of vertebratesHume, David A., Wollscheid-Lengeling, Evi, Rojo, Rocio and Pridans, Clare (2017). The evolution of the macrophage-specific enhancer (Fms intronic regulatory element) within the CSF1R locus of vertebrates. Scientific Reports, 7 (1) 17115, 1-10. doi: 10.1038/s41598-017-15999-x |
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2017 Journal Article CCR2-dependent monocyte-derived macrophages resolve inflammation and restore gut motility in postoperative ileusFarro, Giovanna, Stakenborg, Michelle, Gomez-Pinilla, Pedro J., Labeeuw, Evelien, Goverse, Gera, Giovangiulio, Martina Di, Stakenborg, Nathalie, Meroni, Elisa, D'Errico, Francesca, Elkrim, Yvon, Laoui, Damya, Lisowski, Zofia M., Sauter, Kristin A., Hume, David A., Van Ginderachter, Jo A., Boeckxstaens, Guy E. and Matteoli, Gianluca (2017). CCR2-dependent monocyte-derived macrophages resolve inflammation and restore gut motility in postoperative ileus. Gut, 66 (12), 2098-2109. doi: 10.1136/gutjnl-2016-313144 |
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2017 Journal Article Groups with no coarse embeddings into hyperbolic groupsHume, David and Sisto, Alessandro (2017). Groups with no coarse embeddings into hyperbolic groups. New York Journal of Mathematics, 23, 1657-1670. doi: 10.48550/arXiv.1702.03789 |
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2017 Journal Article CD169+ macrophages are critical for osteoblast maintenance and promote intramembranous and endochondral ossification during bone repairBatoon, Lena, Millard, Susan Marie, Wullschleger, Martin Eduar, Preda, Corina, Wu, Andy Chiu-Ku, Kaur, Simranpreet, Tseng, Hsu-Wen, Hume, David Arthur, Levesque, Jean-Pierre, Raggatt, Liza Jane and Pettit, Allison Robyn (2017). CD169+ macrophages are critical for osteoblast maintenance and promote intramembranous and endochondral ossification during bone repair. Biomaterials, 196, 51-66. doi: 10.1016/j.biomaterials.2017.10.033 |
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2017 Journal Article Effects of Eimeria tenella infection on chicken caecal microbiome diversity, exploring variation associated with severity of pathologyMacdonald, Sarah E., Nolan, Matthew J., Harman, Kimberley, Boulton, Kay, Hume, David A., Tomley, Fiona M., Stabler, Richard A. and Blake, Damer P. (2017). Effects of Eimeria tenella infection on chicken caecal microbiome diversity, exploring variation associated with severity of pathology. PLoS ONE, 12 (9) e0184890, 1-17. doi: 10.1371/journal.pone.0184890 |
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2017 Journal Article A high resolution atlas of gene expression in the domestic sheep (Ovis aries)Clark, Emily L., Bush, Stephen J., McCulloch, Mary E. B., Farquhar, Iseabail L., Young, Rachel, Lefevre, Lucas, Pridans, Clare, Tsang, Hiu, Wu, Chunlei, Afrasiabi, Cyrus, Watson, Mick, Whitelaw, C. Bruce, Freeman, Tom C., Summers, Kim M., Archibald, Alan L. and Hume, David A. (2017). A high resolution atlas of gene expression in the domestic sheep (Ovis aries). PLoS Genetics, 13 (9) e1006997, e1006997. doi: 10.1371/journal.pgen.1006997 |
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2017 Journal Article The genomic architecture of mastitis resistance in dairy sheepBanos, G., Bramis, G., Bush, S. J., Clark, E. L., McCulloch, M. E. B., Smith, J., Schulze, G., Arsenos, G., Hume, D. A. and Psifidi, A. (2017). The genomic architecture of mastitis resistance in dairy sheep. BMC Genomics, 18 (1) 624, 1-18. doi: 10.1186/s12864-017-3982-1 |
