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2014 Journal Article Design and development of exome capture sequencing for the domestic pig (Sus scrofa)Robert, Christelle, Fuentes-Utrilla, Pablo, Troup, Karen, Loecherbach, Julia, Turner, Frances, Talbot, Richard, Archibald, Alan L., Mileham, Alan, Deeb, Nader, Hume, David A. and Watson, Mick (2014). Design and development of exome capture sequencing for the domestic pig (Sus scrofa). BMC Genomics, 15 (1) 550. doi: 10.1186/1471-2164-15-550 |
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2014 Journal Article Transcription and enhancer profiling in human monocyte subsetsSchmidl, Christian, Renner, Kathrin, Peter, Katrin, Eder, Ruediger, Lassmann, Timo, Balwierz, Piotr J., Itoh, Masayohshi, Nagao-Sato, Sayaka, Kawaji, Hideya, Carninci, Piero, Suzuki, Harukazu, Hayashizaki, Yoshihide, Andreesen, Reinhard, Hume, David A., Hoffmann, Petra, Forrest, Alistair R. R., Kreutz, Marina P., Edinger, Matthias, Rehli, Michael, for the FANTOM consortium, Beckhouse, Anthony, Wells, Christine, Vijayan, Dipti, Mason, Elizabeth, Wolvetang, Ernst, Hitchens, Kelly, Le Cao, Kim-Anh, Nielsen, Lars, Fearnley, Liam and Kenna, Tony (2014). Transcription and enhancer profiling in human monocyte subsets. Blood, 123 (17), e90-e99. doi: 10.1182/blood-2013-02-484188 |
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2014 Journal Article An atlas of active enhancers across human cell types and tissuesAndersson, Robin, Gebhard, Claudia, Miguel-Escalada, Irene, Hoof, Ilka, Bornholdt, Jette, Boyd, Mette, Chen, Yun, Zhao, Xiaobei, Schmidl, Christian, Suzuki, Takahiro, Ntini, Evgenia, Arner, Erik, Valen, Eivind, Li, Kang, Schwarzfischer, Lucia, Glatz, Dagmar, Raithel, Johanna, Lilje, Berit, Rapin, Nicolas, Bagger, Frederik Otzen, Jørgensen, Mette, Andersen, Peter Refsing, Bertin, Nicolas, Rackham, Owen, Burroughs, A. Maxwell, Baillie, J. Kenneth, Ishizu, Yuri, Shimizu, Yuri, Furuhata, Erina ... Sandelin, Albin (2014). An atlas of active enhancers across human cell types and tissues. Nature, 507 (7493), 455-461. doi: 10.1038/nature12787 |
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2014 Journal Article Transcriptional switching in macrophages associated with the peritoneal foreign body responseMooney, Jane E., Summers, Kim M., Gongora, Milena, Grimmond, Sean M., Campbell, Julie H., Hume, David A. and Rolfe, Barbara E. (2014). Transcriptional switching in macrophages associated with the peritoneal foreign body response. Immunology and Cell Biology, 92 (6), 518-526. doi: 10.1038/icb.2014.19 |
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2014 Journal Article Network analysis reveals distinct clinical syndromes underlying acute mountain sicknessHall, David P., MacCormick, Ian J. C., Phythian-Adams, Alex T., Rzechorzek, Nina M., Hope-Jones, David, Cosens, Sorrel, Jackson, Stewart, Bates, Matthew G. D., Collier, David J., Hume, David A., Freeman, Thomas, Thompson, A. A. Roger and Baillie, John Kenneth (2014). Network analysis reveals distinct clinical syndromes underlying acute mountain sickness. PLoS ONE, 9 (1) e81229, e81229. doi: 10.1371/journal.pone.0081229 |
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2014 Journal Article Lentiviral vectors containing mouse Csf1r control elements direct macrophage-restricted expression in multiple species of birds and mammalsPridans, Clare, Lillico, Simon, Whitelaw, Bruce and Hume, David A. (2014). Lentiviral vectors containing mouse Csf1r control elements direct macrophage-restricted expression in multiple species of birds and mammals. Molecular Therapy - Methods and Clinical Development, 1 14010, 14010. doi: 10.1038/mtm.2014.10 |
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2014 Journal Article Visualisation of chicken macrophages using transgenic reporter genes: insights into the development of the avian macrophage lineageBalic, Adam, Garcia-Morales, Carla, Vervelde, Lonneke, Gilhooley, Hazel, Sherman, Adrian, Garceau, Valerie, Gutowska, Maria W., Burt, David W., Kaiser, Pete, Hume, David A. and Sang, Helen M. (2014). Visualisation of chicken macrophages using transgenic reporter genes: insights into the development of the avian macrophage lineage. Development, 141 (16), 3255-3265. doi: 10.1242/dev.105593 |
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2014 Journal Article Homeostasis in the mononuclear phagocyte systemJenkins, Stephen J. and Hume, David A. (2014). Homeostasis in the mononuclear phagocyte system. Trends in Immunology, 35 (8), 358-367. doi: 10.1016/j.it.2014.06.006 |
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2014 Journal Article A promoter-level mammalian expression atlasForest, Alistair R. R., Kawaji, Hideya, Rehli, Michael, Baillie, J. Kenneth, De Hoon, Michael J. L., Haberle, Vanja, Lassmann, Timo, Kulakovskiy, Ivan V., Lizio, Marina, Itoh, Masayoshi, Andersson, Robin, Mungall, Christopher J., Meehan, Terrence F., Schmeier, Sebastian, Bertin, Nicholas, Jorgensen, Mette, Dimont, Emmanuel, Arner, Erik, Schmidl, Christian, Schaefer, Ulf, Medvedeva, Yulia A., Plessy, Charles, Vitezic, Morana, Severin, Jessica, Semple, Colin A., Ishizu, Yuri, Young, Robert S., Francescatto, Margherita, Altschuler, Intikhab ... Hayashizaki, Yoshihide (2014). A promoter-level mammalian expression atlas. Nature, 507 (7493), 462-470. doi: 10.1038/nature13182 |
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2013 Journal Article CSF1R mutations in hereditary diffuse leukoencephalopathy with spheroids are loss of functionPridans, Clare, Sauter, Kristin A., Baer, Kristin, Kissel, Holger and Hume, David A. (2013). CSF1R mutations in hereditary diffuse leukoencephalopathy with spheroids are loss of function. Scientific Reports, 3 (1) 3013. doi: 10.1038/srep03013 |
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2013 Journal Article IL-4 directly signals tissue-resident macrophages to proliferate beyond homeostatic levels controlled by CSF-1Jenkins, Stephen J., Ruckerl, Dominik, Thomas, Graham D., Hewitson, James P., Duncan, Sheelagh, Brombacher, Frank, Maizels, Rick M., Hume, David A. and Allen, Judith E. (2013). IL-4 directly signals tissue-resident macrophages to proliferate beyond homeostatic levels controlled by CSF-1. Journal of Experimental Medicine, 210 (11), 2477-2491. doi: 10.1084/jem.20121999 |
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2013 Journal Article The equine alveolar macrophage: functional and phenotypic comparisons with peritoneal macrophagesKaragianni, Anna E., Kapetanovic, Ronan, McGorum, Bruce C., Hume, David A. and Pirie, Scott R. (2013). The equine alveolar macrophage: functional and phenotypic comparisons with peritoneal macrophages. Veterinary Immunology And Immunopathology, 155 (4), 219-228. doi: 10.1016/j.vetimm.2013.07.003 |
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2013 Journal Article An expression atlas of human primary cells: inference of gene function from coexpression networksMabbott, Neil A., Baillie, J. K., Brown, Helen, Freeman, Tom C. and Hume, David A. (2013). An expression atlas of human primary cells: inference of gene function from coexpression networks. BMC Genomics, 14 (1) 632. doi: 10.1186/1471-2164-14-632 |
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2013 Journal Article CX3CR1 reduces Ly6Chigh-monocyte motility within and release from the bone marrow after chemotherapy in miceJacquelin, Sébastien, Licata, Fabrice, Dorgham, Karim, Hermand, Patricia, Poupel, Lucie, Guyon, Elodie, Deterre, Philippe, Hume, David A., Combadière, Christophe and Boissonnas, Alexandre (2013). CX3CR1 reduces Ly6Chigh-monocyte motility within and release from the bone marrow after chemotherapy in mice. Blood, 122 (5), 674-683. doi: 10.1182/blood-2013-01-480749 |
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2013 Journal Article The impact of breed and tissue compartment on the response of pig macrophages to lipopolysaccharideKapetanovic, Ronan, Fairbairn, Lynsey, Downing, Alison, Beraldi, Dario, Sester, David P., Freeman, Tom C., Tuggle, Christopher K., Archibald, Alan L. and Hume, David A. (2013). The impact of breed and tissue compartment on the response of pig macrophages to lipopolysaccharide. Bmc Genomics, 14 (1) 581. doi: 10.1186/1471-2164-14-581 |
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2013 Journal Article Embedding universal covers of graph manifolds in products of treesHume, David and Sisto, Alessandro (2013). Embedding universal covers of graph manifolds in products of trees. Proceedings of the American Mathematical Society, 141 (10), 3337-3340. doi: 10.1090/S0002-9939-2013-11669-2 |
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2013 Journal Article Coexpression analysis of large cancer datasets provides insight into the cellular phenotypes of the tumour microenvironmentDoig, Tamasin N., Hume, David A., Theocharidis, Thanasis, Goodlad, John R., Gregory, Christopher D. and Freeman, Tom C. (2013). Coexpression analysis of large cancer datasets provides insight into the cellular phenotypes of the tumour microenvironment. BMC Genomics, 14 (1) 469. doi: 10.1186/1471-2164-14-469 |
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2013 Journal Article Comparative analysis of monocyte subsets in the pigFairbairn, Lynsey, Kapetanovic, Ronan, Beraldi, Dario, Sester, David P., Tuggle, Chris K., Archibald, Alan L. and Hume, David A. (2013). Comparative analysis of monocyte subsets in the pig. Journal of Immunology, 190 (12), 6389-6396. doi: 10.4049/jimmunol.1300365 |
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2013 Journal Article Histone deacetylase 7 promotes Toll-like Receptor 4-dependent pro-inflammatory gene expression in macrophagesShakespear, Melanie R., Hohenhaus, Daniel M., Kelly, Greg M., Kamal, Nabilah A., Gupta, Praveer, Labzin, Larisa I., Schroder, Kate, Garceau, Valerie, Barbero, Sheila, Iyer, Abishek, Hume, David A., Reid, Robert C., Irvine, Katharine M., Fairlie, David P. and Sweet, Matthew J. (2013). Histone deacetylase 7 promotes Toll-like Receptor 4-dependent pro-inflammatory gene expression in macrophages. Journal of Biological Chemistry, 288 (35), 25362-25374. doi: 10.1074/jbc.M113.496281 |
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2013 Journal Article Regulated expression of PTPRJ/CD148 and an antisense long noncoding RNA in macrophages by proinflammatory stimuliDave, Richa K., Dinger, Marcel E., Andrew, Megan, Askarian-Amiri, Marjan, Hume, David A. and Kellie, Stuart (2013). Regulated expression of PTPRJ/CD148 and an antisense long noncoding RNA in macrophages by proinflammatory stimuli. PLoS One, 8 (6) e68306, e68306.1-e68306.13. doi: 10.1371/journal.pone.0068306 |
