Professor Jessica Mar
Professor

Jessica Mar

Email: 

Availability

Professor Jessica Mar is:
Available for supervision

Fields of research

Bioinformatics and computational biology Biological Sciences

Qualifications

  • Doctor of Philosophy, Harvard University

Search Professor Jessica Mar’s works on UQ eSpace

76 works between 2003 and 2024
All (76) Journal Article (73) Conference Publication (3)

41 - 60 of 76 works

2015

Journal Article

Erratum: Divergent reprogramming routes lead to alternative stem-cell states (Nature (2014) 516 (192-197) DOI: 10.1038/nature14047)

Tonge, Peter D., Corso, Andrew J., Monetti, Claudio, Hussein, Samer M. I., Puri, Mira C., Michael, Iacovos P., Li, Mira, Lee, Dong-Sung, Mar, Jessica C., Cloonan, Nicole, Wood, David L., Gauthier, Maely E., Korn, Othmar, Clancy, Jennifer L., Preiss, Thomas, Grimmond, Sean M., Shin, Jong-Yeon, Seo, Jeong-Sun, Wells, Christine A., Rogers, Ian M. and Nagy, Andras (2015). Erratum: Divergent reprogramming routes lead to alternative stem-cell states (Nature (2014) 516 (192-197) DOI: 10.1038/nature14047). Nature, 523 (7562), 626-626. doi: 10.1038/nature14607

Erratum: Divergent reprogramming routes lead to alternative stem-cell states (Nature (2014) 516 (192-197) DOI: 10.1038/nature14047)

2015

Journal Article

Corrigendum: Genome-wide characterization of the routes to pluripotency

Hussein, Samer M. I., Puri, Mira C., Tonge, Peter D., Benevento, Marco, Corso, Andrew J., Clancy, Jennifer L., Mosbergen, Rowland, Li, Mira, Lee, Dong-Sung, Cloonan, Nicole, Wood, David L. A., Munoz, Javier, Middleton, Robert, Korn, Othmar, Patel, Hardip R., White, Carl A., Shin, Jong-Yeon, Gauthier, Maely E., Le Cao, Kim-Anh, Kim, Jong-Il, Mar, Jessica C., Shakiba, Nika, Ritchie, William, Rasko, John E. J., Grimmond, Sean M., Zandstra, Peter W., Wells, Christine A., Preiss, Thomas, Seo, Jeong-Sun ... Nagy, Andras (2015). Corrigendum: Genome-wide characterization of the routes to pluripotency. Nature, 523 (7562), 626-626. doi: 10.1038/nature14606

Corrigendum: Genome-wide characterization of the routes to pluripotency

2015

Journal Article

Chromosome instability in diffuse large B cell lymphomas is suppressed by activation of the noncanonical NF-κB pathway

Ramachandiran, Sampath, Adon, Arsene, Guo, Xiangxue, Wang, Yi, Wang, Huichen, Chen, Zhengjia, Kowalski, Jeanne, Sunay, Ustun R., Young, Andrew N., Brown, Theresa, Mar, Jessica C., Du, Yuhong, Fu, Haian, Mann, Karen P., Natkunam, Yasodha, Boise, Lawrence H., Saavedra, Harold I., Lossos, Izidore S. and Bernal-Mizrachi, Leon (2015). Chromosome instability in diffuse large B cell lymphomas is suppressed by activation of the noncanonical NF-κB pathway. International Journal of Cancer, 136 (10), 2341-2351. doi: 10.1002/ijc.29301

Chromosome instability in diffuse large B cell lymphomas is suppressed by activation of the noncanonical NF-κB pathway

2015

Journal Article

Single-cell transcriptogenomics reveals transcriptional exclusion of ENU-mutated alleles

Li, Wenge, Calder, R. Brent, Mar, Jessica C. and Vijg, Jan (2015). Single-cell transcriptogenomics reveals transcriptional exclusion of ENU-mutated alleles. Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis, 772, 55-62. doi: 10.1016/j.mrfmmm.2015.01.002

Single-cell transcriptogenomics reveals transcriptional exclusion of ENU-mutated alleles

2014

Journal Article

Divergent reprogramming routes lead to alternative stem-cell states

Tonge, Peter D., Corso, Andrew J., Monetti, Claudio, Hussein, Samer M. I., Puri, Mira C., Michael, Iacovos P., Li, Mira, Lee, Dong-Sung, Mar, Jessica C., Cloonan, Nicole, Wood, David L., Gauthier, Maely E., Korn, Othmar, Clancy, Jennifer L., Preiss, Thomas, Grimmond, Sean M., Shin, Jong-Yeon, Seo, Jeong-Sun, Wells, Christine A., Rogers, Ian M. and Nagy, Andras (2014). Divergent reprogramming routes lead to alternative stem-cell states. Nature, 516 (7530), 192-197. doi: 10.1038/nature14047

Divergent reprogramming routes lead to alternative stem-cell states

2014

Journal Article

Genome-wide characterization of the routes to pluripotency

Hussein, Samer M. I., Puri, Mira C., Tonge, Peter D., Benevento, Marco, Corso, Andrew J., Clancy, Jennifer L., Mosbergen, Rowland, Li, Mira, Lee, Dong-Sung, Cloonan, Nicole, Wood, David L. A., Munoz, Javier, Middleton, Robert, Korn, Othmar, Patel, Hardip R., White, Carl A., Shin, Jong-Yeon, Gauthier, Maely E., Le Cao, Kim-Anh, Kim, Jong-Il, Mar, Jessica C., Shakiba, Nika, Ritchie, William, Rasko, John E. J., Grimmond, Sean M., Zandstra, Peter W., Wells, Christine A., Preiss, Thomas, Seo, Jeong-Sun ... Nagy, Andras (2014). Genome-wide characterization of the routes to pluripotency. Nature, 516 (7530), 198-+. doi: 10.1038/nature14046

Genome-wide characterization of the routes to pluripotency

2014

Journal Article

The meta-epigenomic structure of purified human stem cell populations is defined at cis-regulatory sequences

Wijetunga, N. Ari, Delahaye, Fabien, Zhao, Yong M., Golden, Aaron, Mar, Jessica C., Einstein, Francine H. and Greally, John M. (2014). The meta-epigenomic structure of purified human stem cell populations is defined at cis-regulatory sequences. Nature Communications, 5 (1) 6195. doi: 10.1038/ncomms6195

The meta-epigenomic structure of purified human stem cell populations is defined at cis-regulatory sequences

2014

Journal Article

Gene expression variability as a unifying element of the pluripotency network

Mason, Elizabeth, Mar, Jessica C., Laslett, Andrew, Pera, Martin F., Quackenbush, John, Wolvetang, Ernst and Wells C. (2014). Gene expression variability as a unifying element of the pluripotency network. Stem Cell Reports, 3 (2), 365-377. doi: 10.1016/j.stemcr.2014.06.008

Gene expression variability as a unifying element of the pluripotency network

2014

Journal Article

Single-cell gene expression profiles define self-renewing, pluripotent, and lineage primed states of human pluripotent stem cells

Hough, Shelley R., Thornton, Matthew, Mason, Elizabeth, Mar, Jessica C., Wells, Christine A. and Pera, Martin F. (2014). Single-cell gene expression profiles define self-renewing, pluripotent, and lineage primed states of human pluripotent stem cells. Stem Cell Reports, 2 (6), 881-895. doi: 10.1016/j.stemcr.2014.04.014

Single-cell gene expression profiles define self-renewing, pluripotent, and lineage primed states of human pluripotent stem cells

2014

Journal Article

Allele-specific genome-wide profiling in human primary erythroblasts reveal replication program organization

Mukhopadhyay, Rituparna, Lajugie, Julien, Fourel, Nicolas, Selzer, Ari, Schizas, Michael, Bartholdy, Boris, Mar, Jessica, Lin, Chii Mei, Martin, Melvenia M., Ryan, Michael, Aladjem, Mirit I. and Bouhassira, Eric E. (2014). Allele-specific genome-wide profiling in human primary erythroblasts reveal replication program organization. PLoS Genetics, 10 (5) e1004319, e1004319. doi: 10.1371/journal.pgen.1004319

Allele-specific genome-wide profiling in human primary erythroblasts reveal replication program organization

2014

Journal Article

A promoter-level mammalian expression atlas

Forest, Alistair R. R., Kawaji, Hideya, Rehli, Michael, Baillie, J. Kenneth, De Hoon, Michael J. L., Haberle, Vanja, Lassmann, Timo, Kulakovskiy, Ivan V., Lizio, Marina, Itoh, Masayoshi, Andersson, Robin, Mungall, Christopher J., Meehan, Terrence F., Schmeier, Sebastian, Bertin, Nicholas, Jorgensen, Mette, Dimont, Emmanuel, Arner, Erik, Schmidl, Christian, Schaefer, Ulf, Medvedeva, Yulia A., Plessy, Charles, Vitezic, Morana, Severin, Jessica, Semple, Colin A., Ishizu, Yuri, Young, Robert S., Francescatto, Margherita, Altschuler, Intikhab ... Hayashizaki, Yoshihide (2014). A promoter-level mammalian expression atlas. Nature, 507 (7493), 462-470. doi: 10.1038/nature13182

A promoter-level mammalian expression atlas

2013

Journal Article

Not to be suppressed?: rethinking the host response at a root-parasite interface

Goto, Derek B., Miyazawa, Hikota, Mar, Jessica C. and Sato, Masanao (2013). Not to be suppressed?: rethinking the host response at a root-parasite interface. Plant Science, 213, 9-17. doi: 10.1016/j.plantsci.2013.08.004

Not to be suppressed?: rethinking the host response at a root-parasite interface

2013

Journal Article

Arteriolar niches maintain haematopoietic stem cell quiescence

Kunisaki, Yuya, Bruns, Ingmar, Scheiermann, Christoph, Ahmed, Jalal, Pinho, Sandra, Zhang, Dachuan, Mizoguchi, Toshihide, Wei, Qiaozhi, Lucas, Daniel, Ito, Keisuke, Mar, Jessica C., Bergman, Aviv and Frenette, Paul S. (2013). Arteriolar niches maintain haematopoietic stem cell quiescence. Nature, 502 (7473), 637-643. doi: 10.1038/nature12612

Arteriolar niches maintain haematopoietic stem cell quiescence

2013

Journal Article

Temporal dynamics and transcriptional control using single-cell gene expression analysis

Kouno, Tsukasa, de Hoon, Michiel, Mar, Jessica C., Tomaru, Yasuhiro, Kawano, Mitsuoki, Carninci, Piero, Suzuki, Harukazu, Hayashizaki, Yoshihide and Shin, Jay W. (2013). Temporal dynamics and transcriptional control using single-cell gene expression analysis. Genome Biology, 14 (10) R118. doi: 10.1186/gb-2013-14-10-r118

Temporal dynamics and transcriptional control using single-cell gene expression analysis

2012

Journal Article

Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins

Rozenblatt-Rosen, Orit, Deo, Rahul C., Padi, Megha, Adelmant, Guillaume, Calderwood, Michael A., Rolland, Thomas, Grace, Miranda, Dricot, Amélie, Askenazi, Manor, Tavares, Maria, Pevzner, Samuel J., Abderazzaq, Fieda, Byrdsong, Danielle, Carvunis, Anne-Ruxandra, Chen, Alyce A., Cheng, Jingwei, Correll, Mick, Duarte, Melissa, Fan, Changyu, Feltkamp, Mariet C., Ficarro, Scott B., Franchi, Rachel, Garg, Brijesh K., Gulbahce, Natali, Hao, Tong, Holthaus, Amy M., James, Robert, Korkhin, Anna, Litovchick, Larisa ... Vidal, Marc (2012). Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins. Nature, 487 (7408), 491-495. doi: 10.1038/nature11288

Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins

2012

Journal Article

Induced Pluripotent Stem Cells from Ataxia-Telangiectasia Recapitulate the Cellular Phenotype

Nayler, Sam, Gatei, Magtouf, Kozlov, Sergei, Gatti, Richard, Mar, Jessica C., Wells, Christine A., Lavin, Martin and Wolvetang, Ernst (2012). Induced Pluripotent Stem Cells from Ataxia-Telangiectasia Recapitulate the Cellular Phenotype. Stem Cells Translational Medicine, 1 (7), 523-535. doi: 10.5966/sctm.2012-0024

Induced Pluripotent Stem Cells from Ataxia-Telangiectasia Recapitulate the Cellular Phenotype

2012

Journal Article

Viral perturbations of host networks reflect disease etiology

Gulbahce, Natali, Yan, Han, Dricot, Amélie, Padi, Megha, Byrdsong, Danielle, Franchi, Rachel, Lee, Deok-Sun, Rozenblatt-Rosen, Orit, Mar, Jessica C., Calderwood, Michael A., Baldwin, Amy, Zhao, Bo, Santhanam, Balaji, Braun, Pascal, Simonis, Nicolas, Huh, Kyung-Won, Hellner, Karin, Grace, Miranda, Chen, Alyce, Rubio, Renee, Marto, Jarrod A., Christakis, Nicholas A., Kieff, Elliott, Roth, Frederick P., Roecklein-Canfield, Jennifer, DeCaprio, James A., Cusick, Michael E., Quackenbush, John, Hill, David E. ... Barabási, Albert-László (2012). Viral perturbations of host networks reflect disease etiology. PLoS Computational Biology, 8 (6) e1002531, e1002531. doi: 10.1371/journal.pcbi.1002531

Viral perturbations of host networks reflect disease etiology

2012

Journal Article

nEASE: a method for gene ontology subclassification of high-throughput gene expression data

Chittenden, Thomas W., Howe, Eleanor A., Taylor, Jennifer M., Mar, Jessica C., Aryee, Martin J., Gómez, Harold, Sultana, Razvan, Braisted, John, Nair, Sarita J., Quackenbush, John and Holmes, Chris (2012). nEASE: a method for gene ontology subclassification of high-throughput gene expression data. Bioinformatics, 28 (5) bts011, 726-728. doi: 10.1093/bioinformatics/bts011

nEASE: a method for gene ontology subclassification of high-throughput gene expression data

2012

Journal Article

Genome-wide siRNA screen for mediators of NF-κB activation

Gewurz, Benjamin E., Towfic, Fadi, Mar, Jessica C., Shinners, Nicholas P., Takasaki, Kaoru, Zhao, Bo, Cahir-McFarland, Ellen D., Quackenbush, John, Xavier, Ramnik J. and Kieff, Elliott (2012). Genome-wide siRNA screen for mediators of NF-κB activation. Proceedings of the National Academy of Sciences of the United States of America, 109 (7), 2467-2472. doi: 10.1073/pnas.1120542109

Genome-wide siRNA screen for mediators of NF-κB activation

2011

Journal Article

Attract : A method for identifying core pathways that define cellular phenotypes

Mar, Jessica C., Matigian, Nicholas A., Quackenbush, John and Wells, Christine A. (2011). Attract : A method for identifying core pathways that define cellular phenotypes. PLoS One, 6 (10 Article # e25445) e25445, e25445-1-e25445-6. doi: 10.1371/journal.pone.0025445

Attract : A method for identifying core pathways that define cellular phenotypes

Current funding

  • 2023 - 2025
    A human brain organoid model of acute prenatal hypoxia enables biomarker discovery and drug screening for hypoxic-ischemic encephalopathy.
    NHMRC IDEAS Grants
    Open grant

Past funding

  • 2021 - 2022
    UQ AWARE - A/Prof Jessica Mar
    UQ Amplify Women's Academic Research Equity
    Open grant
  • 2020 - 2023
    Noise rules: investigating how heterogeneity impacts disease transcriptomes
    Georgina Sweet Award for Women in Quantitative Biomedical Science
    Open grant
  • 2018 - 2023
    Developing bioinformatics methods for single cell transcriptomics.
    ARC Future Fellowships
    Open grant
  • 2018 - 2021
    Defective repair of neuronal activity-induced DNA double strand breaks: A novel pathogenic mechanism for neurodegeneration in ataxia-telangiectasia
    NHMRC Project Grant
    Open grant
  • 2011 - 2019
    Stem Cells Australia (ARC Special Research Initiative administered by the University of Melbourne)
    University of Melbourne
    Open grant

Availability

Professor Jessica Mar is:
Available for supervision

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Supervision history

Current supervision

  • Doctor Philosophy

    From Target Discovery to Therapeutic Antibodies

    Principal Advisor

    Other advisors: Dr Martina Jones, Dr Lucia Zacchi

  • Doctor Philosophy

    Investigating the Impact of Sex-based Dimorphism in the Omics of Human Disease

    Principal Advisor

  • Doctor Philosophy

    Elucidating the role of Human Aminoacyl multi- tRNA synthetase complex (MSC) in Hypomyelination with brainstem and spinal cord involvement and leg spasticity (HBSL)

    Associate Advisor

    Other advisors: Professor Stefan Thor, Professor Ernst Wolvetang

  • Doctor Philosophy

    Developing optimal transport models for spatial and single cell data to understand cancer progression

    Associate Advisor

    Other advisors: Associate Professor Peter Simpson, Dr Quan Nguyen

  • Doctor Philosophy

    Multiomics and AI for Hypoxic Ischemic Encephalopathy (HIE) Biomarker and Treatment Discovery with Human Brain Organoids

    Associate Advisor

    Other advisors: Dr Giovanni Pietrogrande, Professor Ernst Wolvetang

Completed supervision

Enquiries

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