Overview
Availability
- Professor Geoff Faulkner is:
- Available for supervision
Qualifications
- Bachelor (Honours) of Science (Advanced), The University of Queensland
- Doctor of Philosophy, The University of Queensland
Works
Search Professor Geoff Faulkner’s works on UQ eSpace
2019
Journal Article
LINE-1 Evasion of epigenetic repression in humans
Sanchez-Luque, Francisco J., Kempen, Marie-Jeanne H.C., Gerdes, Patricia, Vargas-Landin, Dulce B., Richardson, Sandra R., Troskie, Robin-Lee, Jesuadian, J. Samuel, Cheetham, Seth W., Carreira, Patricia E., Salvador-Palomeque, Carmen, García-Cañadas, Marta, Muñoz-Lopez, Martin, Sanchez, Laura, Lundberg, Mischa, Macia, Angela, Heras, Sara R., Brennan, Paul M., Lister, Ryan, Garcia-Perez, Jose L., Ewing, Adam D. and Faulkner, Geoffrey J. (2019). LINE-1 Evasion of epigenetic repression in humans. Molecular Cell, 75 (3), 590-604.e12. doi: 10.1016/j.molcel.2019.05.024
2019
Journal Article
Dynamic methylation of an L1 transduction family during reprogramming and neurodifferentiation
Salvador-Palomeque, Carmen, Sanchez-Luque, Francisco J., Fortuna, Patrick R. J., Ewing, Adam D., Wolvetang, Ernst J., Richardson, Sandra R. and Faulkner, Geoffrey J. (2019). Dynamic methylation of an L1 transduction family during reprogramming and neurodifferentiation. Molecular and Cellular Biology, 39 (7) e00499-18, 1-19. doi: 10.1128/mcb.00499-18
2019
Conference Publication
YY1: an enduring repressor of L1 retrotransposition during human neurodevelopment
Faulkner, G. J. (2019). YY1: an enduring repressor of L1 retrotransposition during human neurodevelopment. 52nd Conference of the European-Society-of-Human-Genetics (ESHG), Gothenburg, Sweden, 15-18 June 2019. LONDON: NATURE PUBLISHING GROUP.
2018
Journal Article
Erratum to: Reprogramming triggers endogenous L1 and Alu retrotransposition in human induced pluripotent stem cells (Nature Communications, (2016), 7, 1, (10286), 10.1038/ncomms10286)
Klawitter, Sabine, Fuchs, Nina V., Upton, Kyle R., Muñoz-Lopez, Martin, Shukla, Ruchi, Wang, Jichang, Garcia-Cañadas, Marta, Lopez-Ruiz, Cesar, Gerhardt, Daniel J., Sebe, Attila, Grabundzija, Ivana, Merkert, Sylvia, Gerdes, Patricia, Pulgarin, J. Andres, Bock, Anja, Held, Ulrike, Witthuhn, Anett, Haase, Alexandra, Sarkadi, Balázs, Löwer, Johannes, Wolvetang, Ernst J., Martin, Ulrich, Ivics, Zoltán, Izsvák, Zsuzsanna, Garcia-Perez, Jose L., Faulkner, Geoffrey J. and Schumann, Gerald G. (2018). Erratum to: Reprogramming triggers endogenous L1 and Alu retrotransposition in human induced pluripotent stem cells (Nature Communications, (2016), 7, 1, (10286), 10.1038/ncomms10286). Nature Communications, 9 (1) 5398, 5398. doi: 10.1038/s41467-018-07917-0
2018
Journal Article
Retrotransposon-induced mosaicism in the neural genome
Bodea, Gabriela O., McKelvey, Eleanor G. Z. and Faulkner, Geoffrey J. (2018). Retrotransposon-induced mosaicism in the neural genome. Open Biology, 8 (7) 180074, 180074. doi: 10.1098/rsob.180074
2018
Journal Article
L1 retrotransposition in the soma: a field jumping ahead
Faulkner, Geoffrey J. and Billon, Victor (2018). L1 retrotransposition in the soma: a field jumping ahead. Mobile DNA, 9 (1) 22, 22. doi: 10.1186/s13100-018-0128-1
2018
Conference Publication
Meeting report: mobile genetic elements and genome plasticity 2018
Abrams, John M., Arkhipova, Irina R., Belfort, Marlene, Boeke, Jef D., Curcio, M. Joan, Faulkner, Geoffrey J., Goodier, John L., Lehmann, Ruth and Levin, Henry L. (2018). Meeting report: mobile genetic elements and genome plasticity 2018. London, United Kingdom: BioMed Central. doi: 10.1186/s13100-018-0126-3
2018
Journal Article
Heritable L1 retrotransposition events during development: understanding their origins: examination of heritable, endogenous L1 retrotransposition in mice opens up exciting new questions and research directions
Richardson, Sandra R. and Faulkner, Geoffrey J. (2018). Heritable L1 retrotransposition events during development: understanding their origins: examination of heritable, endogenous L1 retrotransposition in mice opens up exciting new questions and research directions. BioEssays, 40 (6) 1700189, e1700189. doi: 10.1002/bies.201700189
2018
Journal Article
L1 retrotransposition is a common feature of mammalian hepatocarcinogenesis
Schauer, Stephanie N., Carreira, Patricia E., Shukla, Ruchi, Gerhardt, Daniel J., Gerdes, Patricia, Sanchez-Luque, Francisco J., Nicoli, Paola, Kindlova, Michaela, Ghisletti, Serena, Santos, Alexandre Dos, Rapoud, Delphine, Samuel, Didier, Faivre, Jamila, Ewing, Adam D., Richardson, Sandra R. and Faulkner, Geoffrey J. (2018). L1 retrotransposition is a common feature of mammalian hepatocarcinogenesis. Genome Research, 28 (5), 639-653. doi: 10.1101/gr.226993.117
2018
Journal Article
Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease
Baillie, J. Kenneth, Bretherick, Andrew, Haley, Christopher S., Clohisey, Sara, Gray, Alan, Neyton, Lucile P. A., Barrett, Jeffrey, Stahl, Eli A., Tenesa, Albert, Andersson, Robin, Brown, J. Ben, Faulkner, Geoffrey J., Lizio, Marina, Schaefer, Ulf, Daub, Carsten, Itoh, Masayoshi, Kondo, Naoto, Lassmann, Timo, Kawai, Jun, IIBDGC Consortium, Mole, Damian, Bajic, Vladimir B., Heutink, Peter, Rehli, Michael, Kawaji, Hideya, Sandelin, Albin, Suzuki, Harukazu, Satsangi, Jack, Wells, Christine A. ... Hume, David A. (2018). Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease. PL o S Computational Biology, 14 (3) e1005934, e1005934. doi: 10.1371/journal.pcbi.1005934
2018
Journal Article
L1 retrotransposon heterogeneity in ovarian tumor cell evolution
Nguyen, Thu H. M., Carreira, Patricia E., Sanchez-Luque, Francisco J., Schauer, Stephanie N., Fagg, Allister C., Richardson, Sandra R., Davies, Claire M., Jesuadian, J. Samuel, Kempen, Marie-Jeanne H. C., Troskie, Robin-Lee, James, Cini, Beaven, Elizabeth A., Wallis, Tristan P., Coward, Jermaine I. G., Chetty, Naven P., Crandon, Alexander J., Venter, Deon J., Armes, Jane E., Perrin, Lewis C., Hooper, John D., Ewing, Adam D., Upton, Kyle R. and Faulkner, Geoffrey J. (2018). L1 retrotransposon heterogeneity in ovarian tumor cell evolution. Cell Reports, 23 (13), 3730-3740. doi: 10.1016/j.celrep.2018.05.090
2017
Conference Publication
Reprogramming triggers mobilisation of endogenous retrotransposons in human induced pluripotent stem cells with genotoxic effects on host gene expression
Jung-Klawitter, S., Fuchs, N. V., Upton, K. R., Froemmrich, A., Miskey, C., Munoz-Lopez, M., Shukla, R., Wang, J., Sebe, A., Merkert, S., Bock, A., Held, U., Menzel, M., Gogol-Doering, A., Haase, A., Izsvak, Z., Ivics, Z., Martin, U., Garcia-Perez, J., Faulkner, G. J. and Schumann, G. G. (2017). Reprogramming triggers mobilisation of endogenous retrotransposons in human induced pluripotent stem cells with genotoxic effects on host gene expression. European-Society-of-Gene-and-Cell-Therapy (ESCGT) Congress, Berlin, Germany, 2017. New Rochelle, NY, United States: Mary Ann Liebert.
2017
Journal Article
On the role of H3.3 in retroviral silencing
Wolf, Gernot, Rebollo, Rita, Karimi, Mohammad M., Ewing, Adam D., Kamada, Rui, Wu, Warren, Wu, Brenda, Bachu, Mahesh, Ozato, Keiko, Faulkner, Geoffrey J., Mager, Dixie L., Lorincz, Matthew C. and Macfarlan, Todd S. (2017). On the role of H3.3 in retroviral silencing. Nature, 548 (7665), E1-E6. doi: 10.1038/nature23277
2017
Journal Article
FANTOM5 CAGE profiles of human and mouse samples
Noguchi, Shuhei, Arakawa, Takahiro, Fukuda, Shiro, Furuno, Masaaki, Hasegawa, Akira, Hori, Fumi, Ishikawa-Kato, Sachi, Kaida, Kaoru, Kaiho, Ai, Kanamori-Katayama, Mutsumi, Kawashima, Tsugumi, Kojima, Miki, Kubosaki, Atsutaka, Manabe, Ri-ichiroh, Murata, Mitsuyoshi, Nagao-Sato, Sayaka, Nakazato, Kenichi, Ninomiya, Noriko, Nishiyori-Sueki, Hiromi, Noma, Shohei, Saijyo, Eri, Saka, Akiko, Sakai, Mizuho, Simon, Christophe, Suzuki, Naoko, Tagami, Michihira, Watanabe, Shoko, Yoshida, Shigehiro, Arner, Peter ... Hayashizaki, Yoshihide (2017). FANTOM5 CAGE profiles of human and mouse samples. Scientific Data, 4 (1) 170112, 170112. doi: 10.1038/sdata.2017.112
2017
Journal Article
Heritable L1 retrotransposition in the mouse primordial germline and early embryo
Richardson, Sandra R., Gerdes, Patricia, Gerhardt, Daniel J., Sanchez-Luque, Francisco J., Bodea, Gabriela-Oana, Muñoz-Lopez, Martin, Jesuadian, J. Samuel, Kempen, Marie-Jeanne H. C., Carreira, Patricia E., Jeddeloh, Jeffrey A., Garcia-Perez, Jose L., Kazazian Jr., Haig H., Ewing, Adam D. and Faulkner, Geoffrey J. (2017). Heritable L1 retrotransposition in the mouse primordial germline and early embryo. Genome Research, 27 (8), 1395-1405. doi: 10.1101/gr.219022.116
2017
Journal Article
Mutual epithelium-macrophage dependency in liver carcinogenesis mediated by ST18
Rava, M., D'Andrea, A., Doni, M., Kress, T. R., Ostuni, R., Bianchi, V., Morelli, M. J., Collino, A., Ghisletti, S., Nicoli, P., Recordati, C., Iascone, M., Sonzogni, A., D'Antiga, L., Shukla, R., Faulkner, G. J., Natoli, G., Campaner, S. and Amati, B. (2017). Mutual epithelium-macrophage dependency in liver carcinogenesis mediated by ST18. Hepatology, 65 (5), 1708-1719. doi: 10.1002/hep.28942
2017
Journal Article
Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease
Baillie, J. Kenneth, Arner, Erik, Daub, Carsten, De Hoon, Michiel, Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Carninci, Piero, Forrest, Alistair R. R., Hayashizaki, Yoshihide, Faulkner, Geoffrey J., Wells, Christine A., Rehli, Michael, Pavli, Paul, Summers, Kim M., Hume, David A. and FANTOM Consortium (2017). Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease. PLoS Genetics, 13 (3) e1006641, 1-36. doi: 10.1371/journal.pgen.1006641
2017
Book Chapter
Analysis of somatic LINE-1 insertions in neurons
Sanchez-Luque, Francisco J., Richardson, Sandra R. and Faulkner, Geoffrey J. (2017). Analysis of somatic LINE-1 insertions in neurons. Genomic mosaicism in neurons and other cell types. (pp. 219-251) edited by José María Frade and Fred H. Gage. New York, United States: Humana Press. doi: 10.1007/978-1-4939-7280-7_12
2017
Book Chapter
Neuronal genome plasticity: retrotransposons, environment and disease
Kempen, Marie-Jeanne H. C., Bodea, Gabriela O. and Faulkner, Geoffrey J. (2017). Neuronal genome plasticity: retrotransposons, environment and disease. Human retrotransposons in health and disease. (pp. 107-125) edited by Gael Cristofari. Cham, Switzerland: Springer. doi: 10.1007/978-3-319-48344-3_5
2017
Journal Article
L1 mosaicism in mammals: extent, effects, and evolution
Faulkner, Geoffrey J. and Garcia-Perez, Jose L. (2017). L1 mosaicism in mammals: extent, effects, and evolution. Trends in Genetics, 33 (11), 802-816. doi: 10.1016/j.tig.2017.07.004
Funding
Current funding
Supervision
Availability
- Professor Geoff Faulkner is:
- Available for supervision
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Supervision history
Current supervision
-
Doctor Philosophy
The transposable element regulatory landscape of implantation and trophoblast differentiation
Principal Advisor
-
Doctor Philosophy
L1 retrotransposon regulation in the mammalian neuronal lineage
Principal Advisor
Other advisors: Dr Sandra Richardson, Dr Gabriela-Oana Bodea
-
Doctor Philosophy
Visualising genetic mosaicism during development
Principal Advisor
Other advisors: Dr Sandra Richardson, Dr Gabriela-Oana Bodea
-
Doctor Philosophy
Understanding LINE-1 retrotransposon activity in healthy and diseased dopaminergic neurons
Principal Advisor
Other advisors: Dr Gabriela-Oana Bodea
-
Doctor Philosophy
Rewiring transcription in solid tumours by targeting transposable elements
Principal Advisor
-
Doctor Philosophy
Understanding LINE-1 retrotransposon activity in healthy and diseased dopaminergic neurons
Principal Advisor
Other advisors: Dr Gabriela-Oana Bodea
-
Doctor Philosophy
Jumping Genes in Mammalian Development
Associate Advisor
Other advisors: Dr Sandra Richardson
-
Doctor Philosophy
Investigations into genetic aberrations underlying recurrent ovarian cancer
Associate Advisor
-
Doctor Philosophy
Developing genomic profiling techniques using synthetic DNA methylases
Associate Advisor
Other advisors: Associate Professor Seth Cheetham
Completed supervision
-
2024
Doctor Philosophy
Understanding LINE-1 retrotransposon activity in healthy and diseased dopaminergic neurons
Principal Advisor
Other advisors: Dr Gabriela-Oana Bodea
-
2023
Doctor Philosophy
Nanopore Sequencing for Mobile Element Research: The Long and Short of It
Principal Advisor
Other advisors: Associate Professor Seth Cheetham, Associate Professor Adam Ewing
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2021
Doctor Philosophy
Mobilisation and Regulation of L1 Retrotransposons in Mammalian Development
Principal Advisor
Other advisors: Professor Michael Piper, Dr Sandra Richardson
-
2019
Doctor Philosophy
L1 is dynamic during neurogenesis
Principal Advisor
Other advisors: Professor Ernst Wolvetang, Dr Sandra Richardson
-
2016
Doctor Philosophy
LINE-1 retrotransposition and somatic genome instability in serous ovarian carcinoma
Principal Advisor
-
2024
Doctor Philosophy
Developing genomic profiling techniques using synthetic DNA methylases
Associate Advisor
Other advisors: Associate Professor Seth Cheetham
-
2022
Doctor Philosophy
Functional coding and noncoding pseudogenes in the human genome
Associate Advisor
Other advisors: Associate Professor Adam Ewing, Associate Professor Seth Cheetham
-
2021
Doctor Philosophy
Identifying Novel Regulators of Adult Hippocampal Neurogenesis.
Associate Advisor
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