Overview
Background
Dr Botella's research interests are in genetic engineering, molecular biology and signal transduction in plants.
Dr. Jimmy Botella is Professor of Plant Biotechnology at the University of Queensland. He obtained a degree in Quantum Chemistry from the University of Madrid (Spain) and a PhD in Biochemistry from the University of Malaga (Spain). After postdoctoral positions at Michigan State University and Pennsylvania State University he joined the University of Queensland in 1995. At UQ he founded the Plant Genetic Engineering Laboratory (PGEL) specialising in the fields of tropical and subtropical agricultural biotechnology for almost 15 years. J. Botella has eleven international patents in the field of Plant Biotechnology and is a founding member of two biotechnology companies (Coridon Ltd. and Origo Biotech).
Dr Botella is a member of the Plant Molecular Biology and Biotechnology research group.
Some highlights of the Plant Genetic Engineering Laboratory’s research:
- Production and field trial of the world’s first genetically modified pineapples with genetic constructs to control flowering time. These pineapples will allow farmer control over harvesting times.
- Development of a new technology to confer protection against nematode infestation.
- Discovery of a gene that can confer resistance to the devastating fungus Fusarium oxysporum in plants.
- Development of a new technology to confer protection against pathogenic fungi in plants.
Research interests
Dr. Botella’s research has two major foci: basic cell biology and applied biotechnology. In cell biology he is interested in studying the function of the Heterotrimeric G proteins in plants. This family of proteins is extremely important in humans but their role in pant systems is still largely unknown. Dr. Botella’s research has strongly contributed to the current body of knowledge available in plants with critical contributions such as the discovery and characterization of the first plant gamma subunits and the establishment of these subunits as the critical element conferring function specificity to all plant G proteins. Dr. Botella’s team has also discovered the important role that these proteins play in defense against pathogens. New and unpublished data has now revealed that G proteins are important yield enhancing factors in crops such as rice. Another research interest resides in the communication between plants and insects. There is plenty of knowledge of how important smell, volatiles emitted by the plant, is for foraging insects in order to determine their host preferences. Nevertheless, most of the available studies have been performed using synthetic chemicals in artificial experimental settings. Dr. Botella’s team and collaborators have genetically engineered plants to produce different volatile mixes in the flowers in order to perform in vivo behavioral studies in insects.
Biotechnology research at the Plant Genetic Engineering Laboratory mostly arises from discoveries made in basic research. The PGEL focuses in tropical and subtropical crops. These crops have attracted little attention in terms of biotechnology but are essential sources of food and energy for a large part of the world’s population, especially in Asia and the Indian subcontinent. The PGEL has developed a number of platform technologies that can be applied to multiple crops in order to confer resistance to pathogens, modify plant architecture and control flowering time.
Current research projects include:
- Plant heterotrimeric G proteins: New roles in defence, stomatal control and ABA perception.
- Putting smells into context: using in vivo technologies to understand plant-insect odour communication.
- Use of host-derived RNA interference technology to control plant pathogens (especially pathogenic fungi and nematodes).
- Control of Fusarium wilt disease.
- Genetic improvement of grain crops.
- Genetic engineering research projects
Availability
- Professor Jimmy Botella is:
- Available for supervision
- Media expert
Fields of research
Qualifications
- Bachelor of Quantum Chemistry, Universidad Autónoma de Madrid
- Masters (Coursework) of Science, Universidad Autónoma de Madrid
- Doctor of Philosophy of Biochemistry, Department of Biochemistry
Works
Search Professor Jimmy Botella’s works on UQ eSpace
2024
Journal Article
Characterization of two lycopene beta-cyclases reveal their essential roles in photoprotection in Nicotiana tabacum
Li, Kun, Shen, Mengxin, Wang, Ran, Yang, Wenqi, Zou, Lingmin, Jia, Kun-Peng, Li, Haipeng, Xu, Rui, Jia, Qianyun, Zhang, Cheng, Wang, Yujie, Duan, Zhikun, Sun, Xuwu, Botella, Jose R., Miao, Yuchen and Guo, Jinggong (2024). Characterization of two lycopene beta-cyclases reveal their essential roles in photoprotection in Nicotiana tabacum. Environmental and Experimental Botany, 228 106039, 106039. doi: 10.1016/j.envexpbot.2024.106039
2024
Journal Article
Sequestration of DBR1 to stress granules promotes lariat intronic RNAs accumulation for heat-stress tolerance
Wu, Chengyun, Wang, Xingsong, Li, Yan, Zhen, Weibo, Wang, Chunfei, Wang, Xiaoqing, Xie, Zhouli, Xu, Xiumei, Guo, Siyi, Botella, José Ramón, Zheng, Binglian, Wang, Wei, Song, Chun-Peng and Hu, Zhubing (2024). Sequestration of DBR1 to stress granules promotes lariat intronic RNAs accumulation for heat-stress tolerance. Nature Communications, 15 (1) 7696, 1-17. doi: 10.1038/s41467-024-52034-w
2024
Journal Article
Integration of single-cell and spatial RNA sequencing uncovers spatiotemporal transition of fruit senescence trajectory from exocarp to mesocarp in Pitaya (Hylocereus undatus)
Pang, Xinyue, Sun, Jiaju, Jia, Jingyu, Trusov, Yuri, Chandora, Rahul, Botella, José Ramon, Li, Xin and Gu, Shaobin (2024). Integration of single-cell and spatial RNA sequencing uncovers spatiotemporal transition of fruit senescence trajectory from exocarp to mesocarp in Pitaya (Hylocereus undatus). Postharvest Biology and Technology, 213 112954, 1-12. doi: 10.1016/j.postharvbio.2024.112954
2024
Journal Article
Geminiviral-induced genome editing using miniature CRISPR/Cas12j (CasΦ) and Cas12f variants in plants
Gong, Zheng, Previtera, Dominic Andrew, Wang, Yijie and Botella, José Ramón (2024). Geminiviral-induced genome editing using miniature CRISPR/Cas12j (CasΦ) and Cas12f variants in plants. Plant Cell Reports, 43 (3) 71, 71. doi: 10.1007/s00299-023-03092-9
2024
Journal Article
Conserved Role of Heterotrimeric G Proteins in Plant Defense and Cell Death Progression
Karimian, Parastoo, Trusov, Yuri and Botella, Jose Ramon (2024). Conserved Role of Heterotrimeric G Proteins in Plant Defense and Cell Death Progression. Genes, 15 (1) 115, 1-15. doi: 10.3390/genes15010115
2024
Journal Article
Regulation of lignin biosynthesis by GhCAD37 affects fiber quality and anther vitality in upland cotton
Li, Haipeng, Guo, Jinggong, Li, Kun, Gao, Yuwen, Li, Hang, Long, Lu, Chu, Zongyan, Du, Yubei, Zhao, Xulong, Zhao, Bing, Lan, Chen, Botella, José Ramón, Zhang, Xuebin, Jia, Kun-Peng and Miao, Yuchen (2024). Regulation of lignin biosynthesis by GhCAD37 affects fiber quality and anther vitality in upland cotton. Plant Journal, 120 (6), 2846-2860. doi: 10.1111/tpj.17149
2023
Journal Article
A low-cost, portable, dual-function readout device for amplification-based point-of-need diagnostics
Zou, Yiping, Mason, Michael Glenn and Botella, Jose Ramon (2023). A low-cost, portable, dual-function readout device for amplification-based point-of-need diagnostics. Applied and Environmental Microbiology, 89 (12) A6, 1-17. doi: 10.1128/aem.00902-23
2023
Conference Publication
Use of piggery effluent for point-of-management diagnostics: A proof of concept
Naseem, M.N., Omaleki, L., Templeton, J.M., Muralidhar, M., Botella, J.R., Blackall, P.J. and Turni, C. (2023). Use of piggery effluent for point-of-management diagnostics: A proof of concept. Manipulating Pig Production XIX, Brisbane, QLD Australia, 13-16 November 2023. Amsterdam, Netherlands: Elsevier. doi: 10.1016/j.anscip.2023.09.008
2023
Journal Article
E3 ligases MAC3A and MAC3B ubiquitinate UBIQUITIN-SPECIFIC PROTEASE14 to regulate organ size in Arabidopsis
Guo, Xiaopeng, Zhang, Xin, Jiang, Shan, Qiao, Xin, Meng, Bolun, Wang, Xiaohang, Wang, Yanan, Yang, Kaihuan, Zhang, Yilan, Li, Na, Chen, Tianyan, Kang, Yiyang, Yao, Mengyi, Zhang, Xuan, Wang, Xinru, Zhang, Erling, Li, Junhua, Yan, Dawei, Hu, Zhubing, Botella, José Ramón, Song, Chun-Peng, Li, Yunhai and Guo, Siyi (2023). E3 ligases MAC3A and MAC3B ubiquitinate UBIQUITIN-SPECIFIC PROTEASE14 to regulate organ size in Arabidopsis. Plant Physiology, 194 (2), 684-697. doi: 10.1093/plphys/kiad559
2023
Journal Article
Changing the diagnostic paradigm for sugarcane: development of a mill-based diagnostic for ratoon stunting disease in crude cane juice
Burman, Sriti, Mason, Michael G., Hintzsche, Jessica, Zou, Yiping, Gibbs, Lucy, MacGillycuddy, Laura, Magarey, Robert C. and Botella, José R. (2023). Changing the diagnostic paradigm for sugarcane: development of a mill-based diagnostic for ratoon stunting disease in crude cane juice. Frontiers in Plant Science, 14 1257894, 1-13. doi: 10.3389/fpls.2023.1257894
2023
Journal Article
PDC1 is activated by ABF4 and inhibits seed germination by promoting ROS accumulation in Arabidopsis
Li, Liangliang, Li, Linxiao, Cui, Shenghui, Qian, Dongdong, Lyu, Shijie, Liu, Wencheng, Botella, José Ramón, Li, Huilin, Burritt, David J., Tran, Lam-Son Phan, Li, Weiqiang and Zhang, Yu (2023). PDC1 is activated by ABF4 and inhibits seed germination by promoting ROS accumulation in Arabidopsis. Environmental and Experimental Botany, 206 105188, 105188. doi: 10.1016/j.envexpbot.2022.105188
2022
Journal Article
Overexpression of AHL9 accelerates leaf senescence in Arabidopsis thaliana
Zhou, Yusen, Zhang, Xiaomin, Chen, Jing, Guo, Xiaopeng, Wang, Hongyan, Zhen, Weibo, Zhang, Junli, Hu, Zhubing, Zhang, Xuebing, Botella, José Ramón, Ito, Toshiro and Guo, Siyi (2022). Overexpression of AHL9 accelerates leaf senescence in Arabidopsis thaliana. BMC Plant Biology, 22 (1) 248, 1-12. doi: 10.1186/s12870-022-03622-9
2022
Journal Article
Insights into the molecular mechanisms of CRISPR/Cas9-mediated gene targeting at multiple loci in Arabidopsis
Zhang, Zhengjing, Zeng, Wenjie, Zhang, Wenxin, Li, Jing, Kong, Dali, Zhang, Lei, Wang, Rui, Peng, Fangnan, Kong, Zhe, Ke, Yongping, Zhang, Heng, Kim, Chanhong, Zhang, Huiming, Botella, Jose Ramón, Zhu, Jian-Kang and Miki, Daisuke (2022). Insights into the molecular mechanisms of CRISPR/Cas9-mediated gene targeting at multiple loci in Arabidopsis. Plant Physiology, 190 (4), 2203-2216. doi: 10.1093/plphys/kiac431
2022
Journal Article
Point-of-care DNA amplification for disease diagnosis and management
Botella, José R. (2022). Point-of-care DNA amplification for disease diagnosis and management. Annual Review of Phytopathology, 60 (1), 1-20. doi: 10.1146/annurev-phyto-021621-115027
2022
Journal Article
Are point of management assays relevant for food safety in the poultry industries?
Templeton, J. M., Botella, J. R. and Blackall, P. J. (2022). Are point of management assays relevant for food safety in the poultry industries?. Microbiology Australia, 43 (2), 67-70. doi: 10.1071/MA22025
2022
Journal Article
Expanding the editing window of cytidine base editors with the Rad51 DNA-binding domain in rice
Wei, Chunjie, Liu, Hao, Wang, Wenwen, Luo, Pengyu, Chen, Qiuling, Li, Rou, Wang, Chong, Botella, José Ramón and Zhang, Hui (2022). Expanding the editing window of cytidine base editors with the Rad51 DNA-binding domain in rice. Frontiers in Plant Science, 13 865848, 1-9. doi: 10.3389/fpls.2022.865848
2022
Journal Article
Function of protein kinases in leaf senescence of plants
Yang, Fengbo, Miao, Yuchen, Liu, Yuyue, Botella, Jose R., Li, Weiqiang, Li, Kun and Song, Chun-Peng (2022). Function of protein kinases in leaf senescence of plants. Frontiers in Plant Science, 13 864215, 1-16. doi: 10.3389/fpls.2022.864215
2022
Journal Article
Heterotrimeric G protein signaling in abiotic stress
Wang, Yijie and Botella, Jose Ramón (2022). Heterotrimeric G protein signaling in abiotic stress. Plants, 11 (7) 876, 876. doi: 10.3390/plants11070876
2022
Journal Article
The high chlorophyll fluorescence 244 (HCF244) Is potentially involved in glutathione peroxidase 7-regulated high light stress in Arabidopsis thaliana
Li, Kun, Jia, Qianyun, Guo, Jinggong, Zhu, Zhijuan, Shao, Mengying, Wang, Jin, Li, Weiqiang, Dai, Jie, Guo, Minghui, Li, Rui, Song, Jieqiong, Yang, Fengbo, Du, Jingyi, Botella, Jose R., Song, Chun-Peng and Miao, Yuchen (2022). The high chlorophyll fluorescence 244 (HCF244) Is potentially involved in glutathione peroxidase 7-regulated high light stress in Arabidopsis thaliana. Environmental and Experimental Botany, 195 104767, 104767. doi: 10.1016/j.envexpbot.2021.104767
2022
Journal Article
Abscisic acid-induced cytoplasmic translocation of constitutive photomorphogenic 1 enhances reactive oxygen species accumulation through the HY5-ABI5 pathway to modulate seed germination
Chen, Qing‐Bin, Wang, Wen‐Jing, Zhang, Yue, Zhan, Qi‐Di, Liu, Kang, Botella, José Ramón, Bai, Ling and Song, Chun‐Peng (2022). Abscisic acid-induced cytoplasmic translocation of constitutive photomorphogenic 1 enhances reactive oxygen species accumulation through the HY5-ABI5 pathway to modulate seed germination. Plant, Cell and Environment, 45 (5), 1474-1489. doi: 10.1111/pce.14298
Funding
Current funding
Past funding
Supervision
Availability
- Professor Jimmy Botella is:
- Available for supervision
Before you email them, read our advice on how to contact a supervisor.
Available projects
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Development of new genome editing technologies for crop improvement
The advent of clustered regularly interspaced short palindromic repeat (CRISPR) has had a profound impact on plant biology, and crop improvement. Nevertheless, CRISPR technology is still in its infancy and a number of important problems need to be solved before it can be widely used in multiple crops. Projects are available to explore new CRISPR systems and develop more efficient approaches to improve genome editing applications in crops.
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Molecular mechanisms of crop disease resistance
Heterotrimeric G-proteins (G-proteins) play a vital role in the defence against many important crop pathogens. Our group has been a pioneer in establishing the importance of these proteins in plant immunity and has recently produced a series of CRISPR mutants to further analyse the molecular mechanisms controlling disease resistance in crops. Projects are available to study the defence response in a number of transgenic CRISPR tomato lines.
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Development of point-of-care diagnostics for agriculture
Early detection of pests and pathogens is of paramount importance in reducing agricultural losses. One approach to early detection is point-of-care (POC) diagnostics, which can provide early warning and therefore allow fast deployment of preventive measures to slow down the establishment of crop diseases. Among the available diagnostic technologies, nucleic acid amplification–based diagnostics provide the highest sensitivity and specificity, and those technologies that forego the requirement for thermocycling show the most potential for use at POC.
Projects are available in the design and evelopment of POC diagnostic applications for multiple diseases in crops.
Supervision history
Current supervision
-
Doctor Philosophy
Development of Transgene-free Genome Editing Technologies for the Improvement of Dicot Crops
Principal Advisor
Other advisors: Dr Peter Crisp
-
Doctor Philosophy
Control of flowering in pineapple by genome editing.
Principal Advisor
Other advisors: Dr Yuri Trusov, Dr Guoquan Liu
-
Doctor Philosophy
Development of efficient genome editing technologies for crop improvement
Principal Advisor
Other advisors: Dr Karen Massel
-
Doctor Philosophy
Characterizing the role of the heterotrimeric G protein alpha subunit in plant defence
Principal Advisor
Other advisors: Dr Yuri Trusov
-
Doctor Philosophy
Biotechnological improvement of Vanilla planifolia
Principal Advisor
Other advisors: Professor Robert Henry
-
Doctor Philosophy
Genome editing tools for monocot crop improvement
Associate Advisor
Other advisors: Dr Peter Crisp
-
Doctor Philosophy
Development of on farm diagnostics via nanopore for the pig industry.
Associate Advisor
Other advisors: Dr Noman Naseem, Dr Lida Omaleki, Dr Conny Turni
-
Doctor Philosophy
Genetic diversity of coconut populations prioritised for breeding and conservation in Papua New Guinea
Associate Advisor
Other advisors: Professor Steve Adkins, Dr Sundar Kalaipandian
Completed supervision
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2021
Master Philosophy
Roles of Extra-Large G-protein XLG2 domains in Arabidopsis thaliana
Principal Advisor
Other advisors: Dr Yuri Trusov
-
2021
Doctor Philosophy
Investigating the mechanism of G-proteins mediated defence in plants
Principal Advisor
Other advisors: Dr Yuri Trusov
-
2021
Doctor Philosophy
Functional Characterization of Heterotrimeric G Protein Alpha and Beta Subunits in Tomato
Principal Advisor
Other advisors: Dr Yuri Trusov
-
2020
Doctor Philosophy
Development of diagnostic technologies for point-of-need applications
Principal Advisor
-
2019
Doctor Philosophy
FUNCTION OF ARABIDOPSIS CALMODULIN BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE IN DEFENSE AND PROGRAMMED CELL DEATH
Principal Advisor
Other advisors: Dr Yuri Trusov
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2019
Doctor Philosophy
Identification of a novel activation mechanism of plant heterotrimeric G proteins
Principal Advisor
Other advisors: Dr Yuri Trusov
-
2016
Doctor Philosophy
Development of point-of-care and multiplex diagnostic methods for the detection of plant pathogens
Principal Advisor
Other advisors: Professor Matt Trau
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2015
Doctor Philosophy
Characterization of Heterotrimeric G protein Gamma Subunits in Solanum lycopersicum cv MicroTom: Establishing the Functional Roles of a Novel Type B Gamma Subunit.
Principal Advisor
Other advisors: Dr Yuri Trusov
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2014
Master Philosophy
Studying the Role of Heterotrimeric G proteins in Defense Against Biotrophic and Hemibiotrophic Pathogens
Principal Advisor
Other advisors: Dr Yuri Trusov
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2012
Doctor Philosophy
Molecular Analysis of Genes Involved in Pineapple Fruit Development
Principal Advisor
-
2012
Doctor Philosophy
Establishing the Role of Gamma Subunits in Heterotrimeric G-Protein Signaling Specificity
Principal Advisor
-
2011
Doctor Philosophy
Exploring Heterotrimeric G Protein Diversity in Plants: Identification of a Novel Third ¿ Subunit and Other Aspects of Gß¿ Signalling in Arabidopsis
Principal Advisor
-
2010
Doctor Philosophy
Plants, pests and pollinators: combining technologies to crack the odour code
Principal Advisor
Other advisors: Emeritus Professor Myron Zalucki
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2009
Doctor Philosophy
Cellular roles for Developmentally Regulated G-proteins in plants: Heat stress and protein renaturation
Principal Advisor
Other advisors: Professor Bostjan Kobe
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2007
Doctor Philosophy
FINDING CLUES TO THE FUNCTION OF THE UNKNOWN ARABIDOPSIS GENE AT2G47270.
Principal Advisor
-
2006
Doctor Philosophy
CHARACTERISATION OF THE Arabidopsis BROOMHEAD PHENOTYPE
Principal Advisor
-
2003
Doctor Philosophy
FUNCTIONAL CHARACTERISATION OF atdrgl
Principal Advisor
-
2002
Doctor Philosophy
PROMOTER ANALYSIS OF AIM-1 - A TOUCH INDUCIBLE GENE
Principal Advisor
-
2002
Doctor Philosophy
THE ROLE OF GLUTAMATE DEHYDROGENASE IN HIGHER PLANTS
Principal Advisor
-
2002
Doctor Philosophy
DETAILED MOLECULAR CHARACTERISATION OF A NOVEL GTP-BINDING PROTEIN
Principal Advisor
-
2002
Doctor Philosophy
MOLECULAR CHARACTERISATION OF FACTORS INTERACTING WITH G-PROTEINS
Principal Advisor
-
2002
Doctor Philosophy
HETEROTRIMERIC G PROTIEN IN PLANT SIGNAL TRANSDUCTION: CHARACTERISATION OF A TOBACCO BETA SUB UNIT
Principal Advisor
-
2019
Doctor Philosophy
Optimising molecular tools to study nitrogen utilisation for grain protein storage in Sorghum bicolor
Associate Advisor
Other advisors: Professor Emma Mace, Professor Ian Godwin
-
2003
Doctor Philosophy
THE INFLUENCE OF LIGHT ON NITROGEN METABOLISM
Associate Advisor
Other advisors: Professor Susanne Schmidt
Media
Enquiries
Contact Professor Jimmy Botella directly for media enquiries about:
- Agricultural biotechnology
- Biology - plants
- Biotechnology - plants
- Botany
- Genetic engineering - plants
- Genetic modification
- Genetics
- Genome editing
- GM foods
- Molecular biology - plant
- Plant biotechnology
- Plant genetic engineering
- Plant molecular biology
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