Professor

Geoff Faulkner

Email: 
Phone: 
+61 7 334 66300

Availability

Professor Geoff Faulkner is:
Available for supervision

Qualifications

  • Bachelor (Honours) of Science (Advanced), The University of Queensland
  • Doctor of Philosophy, The University of Queensland

Search Professor Geoff Faulkner’s works on UQ eSpace

106 works between 2003 and 2025
All (106) Journal Article (92) Book Chapter (6) Conference Publication (7) Other Outputs (1)

81 - 100 of 106 works

2012

Journal Article

Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages

Schroder, Kate, Irvine, Katharine M., Taylor, Martin S., Bokil, Nilesh J., Le Cao, Kim-Anh, Masterman, Kelly-Anne, Labzin, Larisa I., Semple, Colin A., Kapetanovic, Ronan, Fairbairn, Lynsey, Akalin, Altuna, Faulkner, Geoffrey J., Baillie, John Kenneth, Gongora, Milena, Daub, Carsten O., Kawaji, Hideya, McLachlan, Geoffrey J., Goldman, Nick, Grimmond, Sean M., Carninci, Piero, Suzuki, Harukazu, Hayashizaki, Yoshihide, Lenhard, Boris, Hume, David A. and Sweet, Matthew J. (2012). Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages. Proceedings of the National Academy of Sciences of the USA, 109 (16), E944-E953. doi: 10.1073/pnas.1110156109

Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages

2012

Journal Article

Promoter architecture of mouse olfactory receptor genes

Plessy, Charles, Pascarella, Giovanni, Bertin, Nicolas, Akalin, Altuna, Carrieri, Claudia, Vassalli, Anne, Lazarevic, Dejan, Severin, Jessica, Vlachouli, Christina, Simone, Roberto, Faulkner, Geoffrey J., Kawai, Jun, Daub, Carsten O., Zucchelli, Silvia, Hayashizaki, Yoshihide, Mombaerts, Peter, Lenhard, Boris, Gustincich, Stefano and Carninci, Piero (2012). Promoter architecture of mouse olfactory receptor genes. Genome Research, 22 (3), 486-497. doi: 10.1101/gr.126201.111

Promoter architecture of mouse olfactory receptor genes

2011

Journal Article

Is somatic retrotransposition a parasitic or symbiotic phenomenon?

Upton, Kyle R., Baillie, J. Kenneth and Faulkner, Geoffrey J. (2011). Is somatic retrotransposition a parasitic or symbiotic phenomenon?. Mobile Genetic Elements, 1 (4), 279-282. doi: 10.4161/mge.18422

Is somatic retrotransposition a parasitic or symbiotic phenomenon?

2011

Journal Article

Somatic retrotransposition alters the genetic landscape of the human brain

Baillie, J. Kenneth, Barnett, Mark W., Upton, Kyle R., Gerhardt, Daniel J., Richmond, Todd A., De Sapio, Fioravante, Brennan. Paul M., Rizzu, Patrizia, Smith, Sarah, Fell, Mark, Talbot, Richard T., Gustincich, Stefano, Freeman, Thomas C., Mattick, John S., Hume, David A., Heutink, Peter, Carninci, Piero, Jeddeloh, Jeffrey A. and Faulkner, Geoffrey J. (2011). Somatic retrotransposition alters the genetic landscape of the human brain. Nature, 479 (7374), 534-537. doi: 10.1038/nature10531

Somatic retrotransposition alters the genetic landscape of the human brain

2011

Journal Article

Retrotransposons: mobile and mutagenic from conception to death

Faulkner, Geoffrey J. (2011). Retrotransposons: mobile and mutagenic from conception to death. FEBS Letters, 585 (11), 1589-1594. doi: 10.1016/j.febslet.2011.03.061

Retrotransposons: mobile and mutagenic from conception to death

2011

Conference Publication

Retrotransposition and the genetic identity of human neurons

Faulkner, G. J. (2011). Retrotransposition and the genetic identity of human neurons. 36th FEBS Congress of the Biochemistry for Tomorrows Medicine, Torino Italy, Jun 25-30, 2011. MALDEN: WILEY-BLACKWELL.

Retrotransposition and the genetic identity of human neurons

2010

Journal Article

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

de Hoon, Michiel J. L., Taft, Ryan J., Hashimoto, Takehiro, Kanamori-Katayama, Mutsumi, Kawaji, Hideya, Kawano, Mitsuoki, Kishima, Mami, Lassmann, Timo, Faulkner, Geoffrey J., Mattick, John S., Daub, Carsten O., Carninci, Piero, Kawai, Jun, Suzuki, Harukazu and Hayashizaki, Yoshihide (2010). Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries. Genome Research, 20 (2), 257-264. doi: 10.1101/gr.095273.109

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

2010

Journal Article

A global view of genomic information - moving beyond the gene and the master regulator

Mattick, John S., Taft, Ryan J. and Faulkner, Geoffrey J. (2010). A global view of genomic information - moving beyond the gene and the master regulator. Trends in Genetics, 26 (1), 21-28. doi: 10.1016/j.tig.2009.11.002

A global view of genomic information - moving beyond the gene and the master regulator

2009

Journal Article

Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite

Hashimoto, T, de Hoon, M. J. L., Grimmond, S. M., Daub, C. O., Hayashizaki, Y and Faulkner, G. J. (2009). Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite. Bioinformatics, 25 (19), 2613-2614. doi: 10.1093/bioinformatics/btp438

Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite

2009

Journal Article

Altruistic functions for selfish DNA

Faulkner, Geoffrey J. and Carninci, Piero (2009). Altruistic functions for selfish DNA. Cell Cycle, 8 (18), 2895-2900. doi: 10.4161/cc.8.18.9536

Altruistic functions for selfish DNA

2009

Journal Article

RNA-MATE: a recursive mapping strategy for high throughput RNA-sequencing data

Cloonan, Nicole, Xu, Qinying, Faulkner, Geoffrey J., Taylor, Darrin F., Tang, Dave T. P., Kolle, Gabriel and Grimmond, Sean M. (2009). RNA-MATE: a recursive mapping strategy for high throughput RNA-sequencing data. Bioinformatics, 25 (19), 2615-2616. doi: 10.1093/bioinformatics/btp459

RNA-MATE: a recursive mapping strategy for high throughput RNA-sequencing data

2009

Journal Article

The regulated retrotransposon transcriptome of mammalian cells

Faulkner, Geoffrey J., Kimura, Yasumasa, Daub, Carsten O., Wani, Shivangi, Plessy, Charles, Irvine, Katharine M., Schroder, Kate, Cloonan, Nicole, Steptoe, Anita L., Lassmann, Timo, Waki, Kazunori, Hornig, Nadine, Arakawa, Takahiro, Takahashi, Hazuki, Kawai, Jun, Forrest, Alistair R. R., Suzuki, Harukazu, Hayashizaki, Yoshihide, Hume, David A., Orlando, Valerio, Grimmond, Sean M. and Carninci, Piero (2009). The regulated retrotransposon transcriptome of mammalian cells. Nature Genetics, 41 (5), 563-571. doi: 10.1038/ng.368

The regulated retrotransposon transcriptome of mammalian cells

2009

Journal Article

Tiny RNAs associated with transcription start sites in animals

Taft, RJ, Glazov, EA, Cloonan, N, Simons, C, Stephen, S, Faulkner, GJ, Lassmann, T, Forrest, ARR, Grimmond, SM, Schroder, K, Irvine, K, Arakawa, T, Nakamura, M, Kubosaki, A, Hayashida, K, Kawazu, C, Murata, M, Nishiyori, H, Fukuda, S, Kawai, J, Daub, CO, Hume, DA, Suzuki, H, Orlando, V, Carninci, P, Hayashizaki, Y and Mattick, JS (2009). Tiny RNAs associated with transcription start sites in animals. Nature Genetics, 41 (5), 572-578. doi: 10.1038/ng.312

Tiny RNAs associated with transcription start sites in animals

2009

Journal Article

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

Suzuki, H, Forrest, ARR, van Nimwegen, E, Daub, CO, Balwierz, PJ, Irvine, KM, Lassmann, T, Ravasi, T, Hasegawa, Y, de Hoon, MJL, Katayama, S, Schroder, K, Carninci, P, Tomaru, Y, Kanamori-Katayama, M, Kubosaki, A, Akalin, A, Ando, Y, Arner, E, Asada, M, Asahara, H, Bailey, T, Bajic, VB, Bauer, D, Beckhouse, AG, Bertin, N, Bjorkegren, J, Brombacher, F, Bulger, E ... Riken Omics Science Center (2009). The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nature Genetics, 41 (5), 553-562. doi: 10.1038/ng.375

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

2009

Book Chapter

Setting CAGE tags in a genomic context

Faulkner, G. J. and Grimmond, S. M. (2009). Setting CAGE tags in a genomic context. Cap- Analysis Gene Expression (Cage): The Science of Decoding Gene Transcription. (pp. 93-100) edited by Carninci, P. Singapore: Pan Stanford Publishing. doi: 10.4032/9789814241359

Setting CAGE tags in a genomic context

2008

Journal Article

A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE

Faulkner, G. J., Forrest, A. R. R., Chalk, A. M., Schroder, K., Hayashizaki, Y., Carninci, P., Hume, D. A. and Grimmond, S. M. (2008). A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE. Genomics, 91 (3), 281-288. doi: 10.1016/j.ygeno.2007.11.003

A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE

2008

Other Outputs

Short sequence tags reveal global transcription of repetitive elements in mammalian genomes

Faulkner, Geoffrey (2008). Short sequence tags reveal global transcription of repetitive elements in mammalian genomes. PhD Thesis, Institute for Molecular Bioscience, The University of Queensland. doi: 10.14264/167578

Short sequence tags reveal global transcription of repetitive elements in mammalian genomes

2008

Journal Article

Stem cell transcriptome profiling via massive-scale mRNA sequencing

Cloonan, Nicole, Forrest, Alistair R. R., Kolle, Gabriel, Gardiner, Brooke B. A., Faulkner, Geoffrey J., Brown, Mellissa K., Taylor, Darrin F ., Steptoe, Anita L., Wani, Shivangi, Bethel, Graeme, Robertson, Alan J., Perkins, Andrew C., Bruce, Stephen J., Clarence, C. Lee, Ranade, Swati S., Peckham, Heather E, Manning, Jonathan M, McKernan, Kevin J and Grimmond, Sean M (2008). Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nature Methods, 5 (7), 613-619. doi: 10.1038/nmeth.1223

Stem cell transcriptome profiling via massive-scale mRNA sequencing

2007

Journal Article

The expression of Clcn7 and Ostm1 in osteoclasts is coregulated by microphthalmia transcription factor

Meadows, Nicholas A., Sharma, Sudarshana M., Faulkner, Geoffrey J., Ostrowski, Michael C., Hume, David A. and Cassady, Alan I. (2007). The expression of Clcn7 and Ostm1 in osteoclasts is coregulated by microphthalmia transcription factor. Journal of Biological Chemistry, 282 (3), 1891-1904. doi: 10.1074/jbc.M608572200

The expression of Clcn7 and Ostm1 in osteoclasts is coregulated by microphthalmia transcription factor

2006

Journal Article

Alternate transcription of the Toll-like receptor signaling cascade

Wells, C. A., Chalk, A. M., Forrest, A., Taylor, D., Waddell, N., Schroder, K., Himes, S. R., Faulkner, G., Lo, S., Kasukawa, T., Kawaji, H., Kai, C., Kawai, J., Katayama, S., Carninci, P., Hayashizaki, Y., Hume, D. A. and Grimmond, S. M. (2006). Alternate transcription of the Toll-like receptor signaling cascade. Genome Biology, 7 (2) R10, R10.1-R10.17. doi: 10.1186/gb-2006-7-2-r10

Alternate transcription of the Toll-like receptor signaling cascade

Current funding

  • 2025 - 2028
    The mobile DNA origins of gene regulation
    ARC Discovery Projects
    Open grant
  • 2025 - 2029
    Mobile DNA decides neuronal fate in the normal and degenerative human brain
    NHMRC Investigator Grants
    Open grant
  • 2023 - 2027
    Using complex models of human trophoblast to study placental biology and disease (NHMRC Synergy grant led by University of Adelaide)
    University of Adelaide
    Open grant

Past funding

  • 2021 - 2024
    Long-read genetic and epigenetic profiling in lung cancer for precision medicine
    Priority-driven Collaborative Cancer Research Scheme
    Open grant
  • 2020 - 2024
    Somatic genome mosaicism in human brain function and neurodegeneration
    NHMRC Investigator Grants
    Open grant
  • 2020 - 2023
    Visualising genetic mosaicism during development
    ARC Discovery Projects
    Open grant
  • 2018 - 2020
    Hyperactive mobile DNA in schizophrenia
    NHMRC Project Grant
    Open grant
  • 2017 - 2019
    Does mobile DNA activity contribute to reproductive failure?
    NHMRC Project Grant
    Open grant
  • 2017 - 2019
    Epigenetic signatures of abnormal adult neurogenesis in Rett syndrome
    NHMRC Project Grant
    Open grant
  • 2017 - 2021
    The functional impact of neuronal L1 retrotransposition in learning and neurodegeneration
    CSL Limited
    Open grant
  • 2017 - 2018
    Unlocking the cellular determinants of retrotransposition
    ARC Discovery Projects
    Open grant
  • 2016 - 2018
    Does mobile DNA impact memory formation?
    NHMRC Project Grant
    Open grant
  • 2016 - 2020
    Neuronal genome mosaicism: a molecular component of cognition?
    NHMRC Research Fellowship
    Open grant
  • 2014 - 2017
    Somatic Mutations in Brain in Alzheimer's Disease (NIH Grant administered by the University of Chicago)
    University of Chicago, The
    Open grant
  • 2014 - 2016
    A three-tiered strategy to prevent destabilisation of the induced pluripotent stem cell genome by L1 retrotransposition
    NHMRC Project Grant
    Open grant
  • 2014 - 2016
    Harnessing endogenous L1-mediated mutagenesis to elucidate new candidate genes for liver cancer
    NHMRC Project Grant
    Open grant
  • 2013 - 2015
    Genetic consequences of mobile DNA activation in abnormal neurodevelopment
    NHMRC Project Grant
    Open grant
  • 2013 - 2015
    Mobile DNA as a contributor to human brain cancer
    NHMRC Project Grant
    Open grant
  • 2013 - 2015
    NHMRC Career Development Fellowship (R.D Wright Biomedical CDF Level1): L1 retrotransposition in human development and disease
    NHMRC Career Development Fellowship
    Open grant
  • 2013 - 2016
    Uncovering the impact of tandem repeat variation on both common and syndromic forms of paediatric obesity
    NHMRC Project Grant
    Open grant

Availability

Professor Geoff Faulkner is:
Available for supervision

Before you email them, read our advice on how to contact a supervisor.

Supervision history

Current supervision

  • Doctor Philosophy

    Rewiring transcription in solid tumours by targeting transposable elements

    Principal Advisor

  • Doctor Philosophy

    L1 retrotransposon regulation in the mammalian neuronal lineage

    Principal Advisor

    Other advisors: Dr Sandra Richardson, Dr Gabriela-Oana Bodea

  • Doctor Philosophy

    The transposable element regulatory landscape of implantation and trophoblast differentiation

    Principal Advisor

  • Doctor Philosophy

    Jumping Genes in Mammalian Development

    Associate Advisor

    Other advisors: Dr Sandra Richardson

Completed supervision

Enquiries

For media enquiries about Professor Geoff Faulkner's areas of expertise, story ideas and help finding experts, contact our Media team:

communications@uq.edu.au