Overview
Background
Dr Gratten completed his undergraduate studies and PhD at The University of Queensland, before undertaking postdoctoral training in evolutionary and quantitative genetics at the University of Sheffield. He then returned to Australia and shifted research focus to psychiatric and neurological genetics, taking up a position as research fellow at the Queensland Brain Institute. In 2013, he was recruited to UQ's Centre for Neurogenetics and Statistical Genomics, and in 2017 was awarded an NHMRC Career Development Fellowship (Level 2). He established the Cognitive Health Genomics group at Mater Research Institute in 2018, with the goal to improve understanding of the etiology of psychiatric and neurological disorders through analysis and integration of whole genome datasets. He has received >$5M in research funding from the NHMRC, Autism Cooperative Research Centre and both Australian (BICARE) and international (Brain & Behavior Research Foundation) philanthropic funders.
Availability
- Honorary Professor Jake Gratten is:
- Available for supervision
Fields of research
Qualifications
- Bachelor of Science, The University of Queensland
- Bachelor (Honours) of Science, The University of Queensland
- Doctor of Philosophy, The University of Queensland
Works
Search Professor Jake Gratten’s works on UQ eSpace
2011
Journal Article
Reduced systemic vascular resistance in healthy volunteers with presyncopal symptoms during a nitrate-stimulated tilt-table test
Tahvanainen, Anna, Koskela, Jenni, Leskinen, Miia, Ilveskoski, Erkki, Nordhausen, Klaus, Kahonen, Mika, Koobi, Tiit, Mustonen, Jukka and Porsti, Ilkka (2011). Reduced systemic vascular resistance in healthy volunteers with presyncopal symptoms during a nitrate-stimulated tilt-table test. British Journal of Clinical Pharmacology, 71 (1), 41-51. doi: 10.1111/j.1365-2125.2010.03794.x
2010
Journal Article
Influence of Age on Associations Between Childhood Risk Factors and Carotid Intima-Media Thickness in Adulthood The Cardiovascular Risk in Young Finns Study, the Childhood Determinants of Adult Health Study, the Bogalusa Heart Study, and the Muscatine Study for the International Childhood Cardiovascular Cohort (i3C) Consortium
Juonala, Markus, Magnussen, Costan G., Venn, Alison, Dwyer, Terence, Burns, Trudy L., Davis, Patricia H., Chen, Wei, Srinivasan, Sathanur R., Daniels, Stephen R., Kahonen, Mika, Laitinen, Tomi, Taittonen, Leena, Berenson, Gerald S., Viikari, Jorma S. A. and Raitakari, Olli T. (2010). Influence of Age on Associations Between Childhood Risk Factors and Carotid Intima-Media Thickness in Adulthood The Cardiovascular Risk in Young Finns Study, the Childhood Determinants of Adult Health Study, the Bogalusa Heart Study, and the Muscatine Study for the International Childhood Cardiovascular Cohort (i3C) Consortium. Circulation, 122 (24), 2514-2520. doi: 10.1161/CIRCULATIONAHA.110.966465
2010
Journal Article
Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution
Heid, Iris M., Jackson, Anne U., Randall, Joshua C., Winkler, Thomas W., Qi, Lu, Steinthorsdottir, Valgerdur, Thorleifsson, Gudmar, Zillikens, M. Carola, Speliotes, Elizabeth K., Maegi, Reedik, Workalemahu, Tsegaselassie, White, Charles C., Bouatia-Naji, Nabila, Harris, Tamara B., Berndt, Sonja I., Ingelsson, Erik, Willer, Cristen J., Weedon, Michael N., Luan, Jianan, Vedantam, Sailaja, Esko, Tonu, Kilpelaeinen, Tuomas O., Kutalik, Zoltan, Li, Shengxu, Monda, Keri L., Dixon, Anna L., Holmes, Christopher C., Kaplan, Lee M., Liang, Liming ... Lindgren, Cecilia M. (2010). Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution. Nature Genetics, 42 (11), 949-962. doi: 10.1038/ng.685
2010
Journal Article
No evidence for warming climate theory of coat colour change in Soay sheep: A comment on Maloney et al.
Gratten, J., Wilson, A. J., McRae, A. F., Beraldi, D., Visscher, P. M., Pemberton, J. M. and Slate, J. (2010). No evidence for warming climate theory of coat colour change in Soay sheep: A comment on Maloney et al.. Biology Letters, 6 (5), 678-679. doi: 10.1098/rsbl.2010.0160
2010
Journal Article
Longitudinal Genome-Wide Association of Cardiovascular Disease Risk Factors in the Bogalusa Heart Study
Smith, Erin N., Chen, Wei, Kahonen, Mika, Kettunen, Johannes, Lehtimaki, Terho, Peltonen, Leena, Raitakari, Olli T., Salem, Rany M., Schork, Nicholas J., Shaw, Marian, Srinivasan, Sathanur R., Topol, Eric J., Viikari, Jorma S., Berenson, Gerald S. and Murray, Sarah S. (2010). Longitudinal Genome-Wide Association of Cardiovascular Disease Risk Factors in the Bogalusa Heart Study. Plos Genetics, 6 (9) e1001094. doi: 10.1371/journal.pgen.1001094
2010
Journal Article
Mapping quantitative trait loci in a wild population using linkage and linkage disequilibrium analyses
Hernandez-Sanchez, J., Chatzipli, A., Beraldi, D., Gratten, J., Pilkington, J. G. and Pemberton, J. M. (2010). Mapping quantitative trait loci in a wild population using linkage and linkage disequilibrium analyses. Genetics Research, 92 (4), 273-281. doi: 10.1017/S0016672310000340
2010
Journal Article
Childbearing, Child-Rearing, Cardiovascular Risk Factors, and Progression of Carotid Intima-Media Thickness The Cardiovascular Risk in Young Finns Study
Skilton, Michael R., Bonnet, Fabrice, Begg, Lisa M., Juonala, Markus, Kahonen, Mika, Lehtimaki, Terho, Viikari, Jorma S. A. and Raitakari, Olli T. (2010). Childbearing, Child-Rearing, Cardiovascular Risk Factors, and Progression of Carotid Intima-Media Thickness The Cardiovascular Risk in Young Finns Study. Stroke, 41 (7), 1332-1337. doi: 10.1161/STROKEAHA.110.579219
2010
Journal Article
Genome mapping in intensively studied wild vertebrate populations
Slate, Jon, Santure, Anna W., Feulner, Philine G. D., Brown, Emily A., Ball, Alex D., Johnston, Susan E. and Gratten, Jake (2010). Genome mapping in intensively studied wild vertebrate populations. Trends in Genetics, 26 (6), 275-284. doi: 10.1016/j.tig.2010.03.005
2010
Journal Article
Distinct Variants at <i>LIN28B</i> Influence Growth in Height from Birth to Adulthood
Widen, Elisabeth, Ripatti, Samuli, Cousminer, Diana L., Surakka, Ida, Lappalainen, Tuuli, Jaervelin, Marjo-Riitta, Eriksson, Johan G., Raitakari, Olli, Salomaa, Veikko, Sovio, Ulla, Hartikainen, Anna-Liisa, Pouta, Anneli, McCarthy, Mark I., Osmond, Clive, Kajantie, Eero, Lehtimaki, Terho, Viikari, Jorma, Kahonen, Mika, Tyler-Smith, Chris, Freimer, Nelson, Hirschhorn, Joel N., Peltonen, Leena and Palotie, Aarno (2010). Distinct Variants at LIN28B Influence Growth in Height from Birth to Adulthood. American Journal of Human Genetics, 86 (5), 773-782. doi: 10.1016/j.ajhg.2010.03.010
2010
Journal Article
Erratum to: Gene mapping in the wild with SNPs: Guidelines and future directions (Genetica, (2009), 136, (97-107), 10.1007/s10709-008-9317-z)
Slate, Jon, Gratten, Jake, Beraldi, Dario, Stapley, Jessica, Hale, Matt and Pemberton, Josephine M. (2010). Erratum to: Gene mapping in the wild with SNPs: Guidelines and future directions (Genetica, (2009), 136, (97-107), 10.1007/s10709-008-9317-z). Genetica, 138 (4), 467-467. doi: 10.1007/s10709-010-9445-0
2010
Journal Article
Horn type and horn length genes map to the same chromosomal region in Soay sheep
Johnston, S. E., Beraldi, D., McRae, A. F., Pemberton, J. M. and Slate, J. (2010). Horn type and horn length genes map to the same chromosomal region in Soay sheep. Heredity, 104 (2), 196-205. doi: 10.1038/hdy.2009.109
2010
Journal Article
The genetic basis of recessive self colour pattern in a wild sheep population
Gratten, J., Pilkington, J. G., Brown, E. A., Beraldi, D., Pemberton, J. M. and Slate, J. (2010). The genetic basis of recessive self colour pattern in a wild sheep population. Heredity, 104 (2), 206-214. doi: 10.1038/hdy.2009.105
2010
Journal Article
Association genetics, population genomics, and conservation: Revealing the genes underlying adaptation in natural populations of plants and animals
Nichols, Krista M., Neale, David B., Gratten, Jake, Wilson, Alastair J., McRae, Allan F., Beraldi, Dario, Visscher, Peter M., Pemberton, Josephine M. and Slate, Jon (2010). Association genetics, population genomics, and conservation: Revealing the genes underlying adaptation in natural populations of plants and animals. Molecular Approaches in Natural Resource Conservation and Management, 123-168.
2009
Journal Article
Ageing and cardiovascular responses to head-up tilt in healthy subjects
Tahvanainen, Anna, Leskinen, Miia, Koskela, Jenni, Ilveskoski, Erkki, Nordhausen, Klaus, Oja, Hannu, Kahonen, Mika, Koobi, Tiit, Mustonen, Jukka and Porsti, Ilkka (2009). Ageing and cardiovascular responses to head-up tilt in healthy subjects. Atherosclerosis, 207 (2), 445-451. doi: 10.1016/j.atherosclerosis.2009.06.001
2009
Journal Article
Gene mapping in the wild with SNPs: Guidelines and future directions
Slate, Jon, Gratten, Jake, Beraldi, Dario, Stapley, Jessica, Hale, Matt and Pemberton, Josephine M. (2009). Gene mapping in the wild with SNPs: Guidelines and future directions. Genetica, 136 (1), 97-107. doi: 10.1007/s10709-008-9317-z
2009
Journal Article
Post-Exercise Assessment of Cardiac Repolarization Alternans in Patients With Coronary Artery Disease Using the Modified Moving Average Method
Slawnych, Michael P., Nieminen, Tuomo, Kahonen, Mika, Kavanagh, Katherine M., Lehtimaki, Terho, Ramadan, Darlene, Viik, Jari, Aggarwal, Sandeep G., Lehtinen, Rami, Ellis, Linda, Nikus, Kjell and Exner, Derek V. (2009). Post-Exercise Assessment of Cardiac Repolarization Alternans in Patients With Coronary Artery Disease Using the Modified Moving Average Method. Journal of the American College of Cardiology, 53 (13), 1130-1137. doi: 10.1016/j.jacc.2008.12.026
2008
Journal Article
Multiplex SNP-SCALE: A cost-effective medium-throughput SNP genotyping method
Kenta, T., Gratten, J., Haigh, N. S., Hinten, G. N., Slate, J., Butlin, R. K. and Burke, T. (2008). Multiplex SNP-SCALE: A cost-effective medium-throughput SNP genotyping method. Molecular Ecology Resources, 8 (6), 1230-1238. doi: 10.1111/j.1755-0998.2008.02190.x
2008
Journal Article
Lifetime body mass index and later atherosclerosis risk in young adults: examining causal links using Mendelian randomization in the Cardiovascular Risk in Young Finns study
Kivimaki, Mika, Smith, George Davey, Timpson, Nic J., Lawlor, Debbie A., Batty, G. David, Kahonen, Mika, Juonala, Markus, Ronnemaa, Tapani, Viikari, Jorma S. A., Lehtimaki, Terho and Raitakari, Olli T. (2008). Lifetime body mass index and later atherosclerosis risk in young adults: examining causal links using Mendelian randomization in the Cardiovascular Risk in Young Finns study. European Heart Journal, 29 (20), 2552-2560. doi: 10.1093/eurheartj/ehn252
2008
Journal Article
Gender and effects of a common genetic variant in the NOS1 regulator <i>NOS1AP</i> on cardiac repolarization in 3761 individuals from two independent populations
Tobin, Martin D., Kahonen, Mika, Braund, Peter, Nieminen, Tuomo, Hajat, Cother, Tomaszewski, Maciej, Viik, Jari, Lehtinen, Rami, Ng, G. Andre, Macfarlane, Peter W., Burton, Paul R., Lehtimaki, Terho and Samani, Nilesh J. (2008). Gender and effects of a common genetic variant in the NOS1 regulator NOS1AP on cardiac repolarization in 3761 individuals from two independent populations. International Journal of Epidemiology, 37 (5), 1132-1141. doi: 10.1093/ije/dyn091
2008
Journal Article
A localized negative genetic correlation constrains microevolution of coat color in wild sheep
Gratten, J., Wilson, A. J., McRae, A. F., Beraldi, D., Visscher, P. M., Pemberton, J. M. and Slate, J. (2008). A localized negative genetic correlation constrains microevolution of coat color in wild sheep. Science, 319 (5861), 318-320. doi: 10.1126/science.1151182
Funding
Current funding
Supervision
Availability
- Honorary Professor Jake Gratten is:
- Available for supervision
Looking for a supervisor? Read our advice on how to choose a supervisor.
Available projects
-
Understanding mechanisms underlying multiple sclerosis using large-scale multi-omics
We are seeking a highly motivated PhD candidate with a background and interest in human genomics, statistics and neurodegenerative disease to join the Cognitive Health Genomics group at the Mater Research Institute, UQ. The successful candidate would work on an NHMRC-funded study to improve understanding of the pathophysiology of multiple sclerosis by integrating large-scale multi-omics data using cutting-edge statistical methods.
Requirements
- Bachelor’s degree with first class honours, or Masters, in statistics, mathematics, bioinformatics, human genetics, animal breeding, or an equivalent field.
- Prior research experience in human genomics or animal breeding, including a familiarity with high-throughput genomic data and working in a high-performance computing environment.
- Skills in the R statistical computing language and/or python, C++ or an equivalent computing language.
- High degree of motivation and organisation, and an ability to work both independently and as part of a team.
- Excellent written and oral communications skills in English.
For further information please contact Prof Jake Gratten, jacob.gratten@mater.uq.edu.au.
-
Understanding co-occurring conditions in autism using large-scale multi-omics
This PhD project aims to improve understanding of causal factors, biological mechanisms and predictors of co-occuring conditions (including gastrointestinal complaints, sleep problems and immune conditions) in autism spectrum disorder (ASD) using large-scale integrative multi-omics.
-
Improved understanding of Parkinson's disease using large-scale multi-omics
This PhD project aims to improve understanding of the pathophysiology of Parkinson’s disease (PD) onset and progression by integrating single cell and spatial transcriptomics data in post-mortem brain samples from donors with and without a diagnosis of PD.
Supervision history
Current supervision
-
Doctor Philosophy
Cellular genomics of Parkinson's disease
Principal Advisor
Other advisors: Dr Quan Nguyen, Professor Allan McRae, Dr Yuanhao Yang
-
Doctor Philosophy
Multiomics of common co-occurring conditions in autism spectrum disorder
Principal Advisor
Other advisors: Professor Allan McRae, Dr Yuanhao Yang
-
Doctor Philosophy
Understanding mechanisms underlying multiple sclerosis using large-scale multi-omics
Principal Advisor
Other advisors: Dr Yuanhao Yang
-
Doctor Philosophy
Using multi-omics approaches to characterise determinants of early growth trajectories and their consequences on later life health
Associate Advisor
Other advisors: Professor David Evans, Dr Nicole Warrington
Completed supervision
-
2022
Doctor Philosophy
Multi-omics data offer systemic insights into autism
Principal Advisor
Other advisors: Professor Naomi Wray, Professor Gerald Holtmann
-
2019
Doctor Philosophy
Systems Genomics of Parkinson's Disease
Principal Advisor
Other advisors: Professor Peter Visscher
-
2018
Master Philosophy
Integrating genome-wide association study data with gene expression to understand complex traits and common diseases
Principal Advisor
Other advisors: Professor Allan McRae, Professor Naomi Wray
-
2024
Doctor Philosophy
The Role of the Gut Microbiome in Psychiatric Illness: From Prenatal Risk Factors to Treatment Resistance
Associate Advisor
Other advisors: Professor Dan Siskind, Professor Darryl Eyles
-
2015
Doctor Philosophy
Analysis of non-coding RNA expression in schizophrenia brain
Associate Advisor
Other advisors: Professor Bryan Mowry
Media
Enquiries
For media enquiries about Honorary Professor Jake Gratten's areas of expertise, story ideas and help finding experts, contact our Media team: