
Overview
Background
John Upham is a clinical scientist and physician with longstanding research interests in the immunological basis of asthma and chronic lung disease, the role of dendritic cells in allergy and virus infections of the lung, and the development of novel approaches to severe asthma treatment.
John is highly influential in his field, with > 195 publications, > 5,400 citations and an H index of 46. Since 2009, he has 112 publications (1st/senior author on 45%) with a Field-Weighted Citation Impact of 2.03. Moreover, 21.5% of publications are in the top 10% of most-cited publications worldwide (field-weighted). His publications have been cited in >20 different subject areas, demonstrating translation to fields other than Medicine. His research has international reach with citations in 80 countries (Scopus Dec 2018).
In the last 10 years, he has secured over $24 million in research funding. John has been awarded 8 NHMRC Project grants (4 as CIA in the last 5 years), 2 NHMRC CRE (“Closing the gap in Indigenous Lung Health” and “Severe Asthma”), and 1 NHMRC Development Grant. He currently holds NHMRC grants of $7.5 million, including $2.96 million as CIA. John was regularly an invited (9x), plenary (3x) and Chair (9x) at national and international conferences in the last 5 years. In recognition of his international standing and influence in the field, he was elected Fellow of the American Academy of Allergy, Asthma & Immunology (2004) and the Thoracic Society of Australia and New Zealand (2015).
Availability
- Honorary Professor John Upham is:
- Available for supervision
- Media expert
Fields of research
Qualifications
- Doctor of Philosophy, University of Western Australia
Research interests
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Immune function and susceptibility to virus infections in asthma and COPD
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Plasmacytoid dendritic cells
Type I interferon production Immune regulation
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Severe asthma: towards evidence-based assessment and management
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Innate immunity and bacterial infections of the lungs
Bronchiectasis and chronic suppurative lung disease in children Lung health in Indigenous children
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Allergy and immune tolerance
Research impacts
John is currently the President (2021-22) of the Thoracic Society of Australia and Zealand and is a key member of the NHMRC funded Centre of Research Excellence (CRE) in Asthma Treatable Traits. He has played a leadership role in organising and co-chairing three recent national symposia on severe asthma to facilitate research collaboration, build research and clinical capacity, and improve models of care for severe asthma. He has been a member of multiple advisory boards to pharmaceutical companies, both international and national (AstraZeneca, GSK, Novartis, Nycomed, Boehringer-Ingelheim, Mundipharma, Menarini), and has provided advice to the Pharmaceutical Benefits Advisory Committee. His research has provided new treatment options for severe asthma, and guided the appropriate length of antibiotic treatment for Indigenous children with pneumonia, protracted bacterial bronchitis and bronchiectasis. John's research will inform best use of influenza vaccination in COPD, and guide the use of conjugate vaccines to improve immunity to Haemophilus in Indigenous children. He contributed to Clinical Practice Guidelines for the use of omalizumab and mepolizumab in Australia and he was part of the working group that prepared a web-based Severe Asthma Toolkit for the Severe Asthma CRE.
Works
Search Professor John Upham’s works on UQ eSpace
2015
Conference Publication
A Single Bout of Exercise Is Associated with a Transient Reduction to Exhaled Nitric Oxide in Physically Inactive Adults with Asthma
Scott, H., Latham, J., Callister, R., Pretto, J., Saltos, N., Upham, J. and Wood, L. (2015). A Single Bout of Exercise Is Associated with a Transient Reduction to Exhaled Nitric Oxide in Physically Inactive Adults with Asthma. The Annual Scientific Meeting for Leaders in Lung Health and Respiratory Science (TSANZSRS), Gold Coast, QLD Australia, 27 March - 1 April 2015. Richmond, VIC Australia: Wiley-Blackwell Publishing Asia. doi: 10.1111/resp.12495_2
2014
Conference Publication
pDC expansion of nTreg limits severe Pneumovirus-induced bronchiolitis and attenuates the onset of virus-provoked asthma
Lynch, J. P., Werder, R. B., Rogers, M. J., Lane, K., Loh, Z., Simpson, J., Diener, K., Hayball, J., Zhang, P., Swiecki, M., Colonna, M., Haque, A., Spann, K., Mazzone, S. B., Hill, G. R., Upham, J. W. and Phipps, S. (2014). pDC expansion of nTreg limits severe Pneumovirus-induced bronchiolitis and attenuates the onset of virus-provoked asthma. Thoracic Society Australia New Zealand Australian New Zealand Society Respiratory Science Annual Scientific Meeting 2015, Queensland Australia, Mar 27-Apr 01, 2015. HOBOKEN: WILEY-BLACKWELL.
2014
Journal Article
Mediators of neutrophil function in children with protracted bacterial bronchitis
Baines, Katherine J., Upham, John W., Yerkovich, Stephanie T., Chang, Anne B., Marchant, Julie M., Carroll, Melanie, Simpson, Jodie L. and Gibson, Peter G. (2014). Mediators of neutrophil function in children with protracted bacterial bronchitis. Chest, 146 (4), 1013-1020. doi: 10.1378/chest.14-0131
2014
Journal Article
Asthma is associated with multiple alterations in anti-viral innate signalling pathways
Pritchard, Antonia L., White, Olivia J., Burel, Julie G., Carroll, Melanie L., Phipps, Simon and Upham, John W. (2014). Asthma is associated with multiple alterations in anti-viral innate signalling pathways. PLoS One, 9 (9) 0106501, e106501.1-e106501.11. doi: 10.1371/journal.pone.0106501
2014
Conference Publication
Inter-instrument variability in exhaled nitric oxide measurement and implications on test interpretation
Pretto, Jeffrey, Eckert, Brenton, Simpson, Jodie, Powell, Heather, Upham, John and Gibson, Peter (2014). Inter-instrument variability in exhaled nitric oxide measurement and implications on test interpretation. SHEFFIELD: EUROPEAN RESPIRATORY SOC JOURNALS LTD.
2014
Conference Publication
Blood cytotoxic/ pro -inflammatory mediators in severe asthma
Hodge, Sandra, Hodge, Greg, Simpson, Jodie L., Yang, Ian, Upham, John, James, Alan, Gibson, Peter G. and Reynolds, Paul N. (2014). Blood cytotoxic/ pro -inflammatory mediators in severe asthma. SHEFFIELD: EUROPEAN RESPIRATORY SOC JOURNALS LTD.
2014
Conference Publication
SEVERE REFRACTORY ALLERGIC ASTHMA IN AUSTRALIA: THE AUSTRALIAN XOLAIR REGISTRY (AXR)
Sutherland, Michael, Gibson, Peter, Thien, Frank, Peters, Matthew, Upham, John, Reddel, Helen, Marks, Guy, Katelaris, Connie and Gilman, Andrew (2014). SEVERE REFRACTORY ALLERGIC ASTHMA IN AUSTRALIA: THE AUSTRALIAN XOLAIR REGISTRY (AXR). HOBOKEN: WILEY-BLACKWELL.
2014
Journal Article
Full blood count parameters for the detection of asthma inflammatory phenotypes
Zhang, X. -Y., Simpson, J. L., Powell, H., Yang, I. A., Upham, J. W., Reynolds, P. N., Hodge, S., James, A. L., Jenkins, C., Peters, M. J., Lin, J. -T. and Gibson, P. G. (2014). Full blood count parameters for the detection of asthma inflammatory phenotypes. Clinical and Experimental Allergy, 44 (9), 1137-1145. doi: 10.1111/cea.12345
2014
Conference Publication
An immunodiagnostic assay for quantitation of specific IgE to the major pollen allergen component, Pas n 1, of the subtropical Bahia grass
Timbrell, V, Riebelt, L., Simmonds, C., Butler, C., Upham, J., Smith, P., van Nunen, S., Smith, W., McLean-Tooke, A., Solley, G., Kober, A., Langguth, D. and Davies, J. M. (2014). An immunodiagnostic assay for quantitation of specific IgE to the major pollen allergen component, Pas n 1, of the subtropical Bahia grass. European-Academy-of-Allergy-and-Clinical-Immunology Congress, Copenhagen Denmark, Jun 07-11, 2014. HOBOKEN: WILEY-BLACKWELL.
2014
Conference Publication
Late-breaking abstract: Improving cell mediated immunity to non-typeable haemophilus influenzae in children with chronic suppurative lung disease
Upham, John, Pizzutto, Susan, Yerkovich, Stephanie, Thomas, Wayne, Hales, Belinda and Chang, Anne (2014). Late-breaking abstract: Improving cell mediated immunity to non-typeable haemophilus influenzae in children with chronic suppurative lung disease. SHEFFIELD: EUROPEAN RESPIRATORY SOC JOURNALS LTD.
2014
Journal Article
Children with chronic suppurative lung disease have a reduced capacity to synthesize interferon-gamma in vitro in response to non-typeable Haemophilus influenzae
Pizzutto, Susan J., Yerkovich, Stephanie T., Upham, John W., Hales, Belinda J., Thomas, Wayne R. and Chang, Anne B. (2014). Children with chronic suppurative lung disease have a reduced capacity to synthesize interferon-gamma in vitro in response to non-typeable Haemophilus influenzae. PLoS One, 9 (8) e104236, e104236.1-e104236.10. doi: 10.1371/journal.pone.0104236
2014
Journal Article
Adenovirus species C is associated with chronic suppurative lung diseases in children
Wurzel, D.F., Mackay, I.M., Marchant, J.M., Wang, C.Y.T., Yerkovich, S.T., Upham, J.W., Smith-Vaughan, H.C., Petsky, H.L. and Chang, A.B. (2014). Adenovirus species C is associated with chronic suppurative lung diseases in children. Clinical Infectious Diseases, 59 (1), 34-40. doi: 10.1093/cid/ciu225
2014
Journal Article
Prospective characterization of protracted bacterial bronchitis in children
Wurzel, D.F., Marchant, J.M., Yerkovich, S.T., Upham, J.W., Mackay, I.M., Masters, I.B. and Chang, A.B. (2014). Prospective characterization of protracted bacterial bronchitis in children. Chest, 145 (6), 1271-1278. doi: 10.1378/chest.13-2442
2014
Journal Article
Influenza epidemiology, vaccine coverage and vaccine effectiveness in sentinel Australian hospitals in 2013: the Influenza Complications Alert Network
Cheng, Allen C., Dwyer, Dominic E., Holmes, Mark, Irving, Louis B., Brown, Simon G. A., Waterer, Grant W., Korman, Tony M., Hunter, Cameron, Hewagama, Saliya, Friedman, Nadia D., Wark, Peter A., Simpson, Graham, Upham, John W., Bowler, Simon D., Senenayake, Sanjaya N., Kotsimbos, Tom C. and Kelly, Paul M. (2014). Influenza epidemiology, vaccine coverage and vaccine effectiveness in sentinel Australian hospitals in 2013: the Influenza Complications Alert Network. Communicable diseases intelligence quarterly report, 38 (2), E143-E149.
2014
Conference Publication
Galectin 3 and Galectin 3 Binding Protein in Asthma Inflammatory Subtypes
Simpson, J., Gao, P., Baines, K., Yang, I, Reynolds, P., Hodge, S., James, A., Upham, J., Jenkins, C., Peters, M. and Gibson, P. (2014). Galectin 3 and Galectin 3 Binding Protein in Asthma Inflammatory Subtypes. HOBOKEN: WILEY-BLACKWELL.
2014
Conference Publication
SEVERE REFRACTORY ALLERGIC ASTHMA IN AUSTRALIA: THE AUSTRALIAN XOLAIR REGISTRY (AXR)
Guo, M., Gibson, P., Thien, F., Peters, M., Sutherland, M., Upham, J., Reddel, H., Marks, G., Katelaris, C., Gilman, A., Rimmer, J., Yang, , Bowden, J., Robinson, P. and Bowler, S. (2014). SEVERE REFRACTORY ALLERGIC ASTHMA IN AUSTRALIA: THE AUSTRALIAN XOLAIR REGISTRY (AXR). HOBOKEN: WILEY-BLACKWELL.
2014
Conference Publication
EXHALED NITRIC OXIDE MEASUREMENT: INTER-INSTRUMENT VARIABILITY AND IMPLICATIONS ON TESTS INTERPRETATION
Eckert, B., Simpson, J., Powell, H., Pretto, J., Upham, J. and Gibson, P. (2014). EXHALED NITRIC OXIDE MEASUREMENT: INTER-INSTRUMENT VARIABILITY AND IMPLICATIONS ON TESTS INTERPRETATION. HOBOKEN: WILEY-BLACKWELL.
2014
Conference Publication
EXHALED NITRIC OXIDE MEASUREMENT: INTER-INSTRUMENT VARIABILITY AND IMPLICATIONS ON TEST INTERPRETATION
Eckert, B., Simpson, J., Powell, H., Pretto, J., Upham, J. and Gibson, P. (2014). EXHALED NITRIC OXIDE MEASUREMENT: INTER-INSTRUMENT VARIABILITY AND IMPLICATIONS ON TEST INTERPRETATION. HOBOKEN: WILEY-BLACKWELL. doi: 10.1111/resp.12262_16
2014
Conference Publication
Clinical Factors Associated with Outcome in Patients Admitted to a Respiratory High Dependency Unit with Hypoxaemic Respiratory Failure
Wong, M., Upham, J. and Murphy, M. (2014). Clinical Factors Associated with Outcome in Patients Admitted to a Respiratory High Dependency Unit with Hypoxaemic Respiratory Failure. HOBOKEN: WILEY-BLACKWELL.
2014
Conference Publication
Reduced Macrophage Phagocytic Host Response to Nthi in Children with Bronchiectasis
Hodge, S., Hodge, G., Pizzutto, S., Petsky, H., Gibson, P., Chang, A. and Upham, J. (2014). Reduced Macrophage Phagocytic Host Response to Nthi in Children with Bronchiectasis. HOBOKEN: WILEY-LISS.
Funding
Past funding
Supervision
Availability
- Honorary Professor John Upham is:
- Available for supervision
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Available projects
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Immune dysregulation in asthma and host defence against respiratory viruses
Our program of translational research is focussed on the study of immune function and dysfunction in asthma, and host defence against respiratory viruses, especially human rhinoviruses. We are interested in the mechanisms leading to excessive airway inflammation in asthma, and why people with asthma are unusually susceptible to asthma attacks during respiratory viral infections. Our aim is to discover new therapeutic targets in severe asthma.
Research Projects
- The function of key immune cells such as antigen presenting cells and NK cells
- The role of polarizing cytokines such as IL-33, IL-25 and TSLP in altering host defence against viruses.
- How macrolide antibiotics alter immune function
Supervision history
Current supervision
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Doctor Philosophy
Transmission dynamics of multi-drug resistant tuberculosis amongst immune suppressed patients exposed to an infectious case
Associate Advisor
Other advisors: Professor Antje Blumenthal, Professor Rachel Thomson
Completed supervision
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2023
Doctor Philosophy
Advancing management of pulmonary thromboembolic disease: from acute pulmonary embolism to pulmonary hypertension
Principal Advisor
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2023
Doctor Philosophy
Using proteomics to understand and prevent asthma exacerbations with macrolide antibiotics
Principal Advisor
Other advisors: Professor Ian Yang
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2021
Doctor Philosophy
Role of Regulatory T cells in modulating antiviral immune responses to rhinovirus: relevance to asthma
Principal Advisor
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2019
Doctor Philosophy
The impact of asthma, toll-like receptors 7 and 8, genetic and clinical determinants on antiviral immune response
Principal Advisor
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2020
Doctor Philosophy
The influence of maternal diet on microbiome assembly and severity of viral bronchiolitis in the offspring
Associate Advisor
Other advisors: Associate Professor Paul Dennis
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2019
Doctor Philosophy
The role of necroptosis in the development of severe bronchiolitis and subsequent asthma
Associate Advisor
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2018
Doctor Philosophy
The role of the interleukin-6 pathway in asthma
Associate Advisor
Other advisors: Professor Nick Martin
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2017
Doctor Philosophy
A critical contribution of the airway epithelium to the pathogenesis of viral bronchiolitis and asthma
Associate Advisor
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2016
Doctor Philosophy
The role of interferon regulatory factor 3 and 7 in virus-induced bronchiolitis and the onset of asthma.
Associate Advisor
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2016
Doctor Philosophy
Understanding the cellular and molecular processes that link RAGE gene-deletion with the development of pneumovirus-induced bronchiolitis and paucigranulocytic asthma
Associate Advisor
Other advisors: Professor Peter Sly
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2015
Doctor Philosophy
The plasmacytoid dendritic cell: a cell at the cross-roads in asthma
Associate Advisor
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2015
Doctor Philosophy
Chronic wet cough in children and further exploration of protracted bacterial bronchitis
Associate Advisor
Media
Enquiries
Contact Honorary Professor John Upham directly for media enquiries about:
- Allergies
- Asthma
- Chronic obstructive pulmonary disease
- Dendritic cells
- Immunity
- Lung infections
- Lungs - virus infections
- Virus infections of the lung
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