
Overview
Background
John Upham is a clinical scientist and physician with longstanding research interests in the immunological basis of asthma and chronic lung disease, the role of dendritic cells in allergy and virus infections of the lung, and the development of novel approaches to severe asthma treatment.
John is highly influential in his field, with > 195 publications, > 5,400 citations and an H index of 46. Since 2009, he has 112 publications (1st/senior author on 45%) with a Field-Weighted Citation Impact of 2.03. Moreover, 21.5% of publications are in the top 10% of most-cited publications worldwide (field-weighted). His publications have been cited in >20 different subject areas, demonstrating translation to fields other than Medicine. His research has international reach with citations in 80 countries (Scopus Dec 2018).
In the last 10 years, he has secured over $24 million in research funding. John has been awarded 8 NHMRC Project grants (4 as CIA in the last 5 years), 2 NHMRC CRE (“Closing the gap in Indigenous Lung Health” and “Severe Asthma”), and 1 NHMRC Development Grant. He currently holds NHMRC grants of $7.5 million, including $2.96 million as CIA. John was regularly an invited (9x), plenary (3x) and Chair (9x) at national and international conferences in the last 5 years. In recognition of his international standing and influence in the field, he was elected Fellow of the American Academy of Allergy, Asthma & Immunology (2004) and the Thoracic Society of Australia and New Zealand (2015).
Availability
- Honorary Professor John Upham is:
- Available for supervision
- Media expert
Fields of research
Qualifications
- Doctor of Philosophy, University of Western Australia
Research interests
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Immune function and susceptibility to virus infections in asthma and COPD
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Plasmacytoid dendritic cells
Type I interferon production Immune regulation
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Severe asthma: towards evidence-based assessment and management
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Innate immunity and bacterial infections of the lungs
Bronchiectasis and chronic suppurative lung disease in children Lung health in Indigenous children
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Allergy and immune tolerance
Research impacts
John is currently the President (2021-22) of the Thoracic Society of Australia and Zealand and is a key member of the NHMRC funded Centre of Research Excellence (CRE) in Asthma Treatable Traits. He has played a leadership role in organising and co-chairing three recent national symposia on severe asthma to facilitate research collaboration, build research and clinical capacity, and improve models of care for severe asthma. He has been a member of multiple advisory boards to pharmaceutical companies, both international and national (AstraZeneca, GSK, Novartis, Nycomed, Boehringer-Ingelheim, Mundipharma, Menarini), and has provided advice to the Pharmaceutical Benefits Advisory Committee. His research has provided new treatment options for severe asthma, and guided the appropriate length of antibiotic treatment for Indigenous children with pneumonia, protracted bacterial bronchitis and bronchiectasis. John's research will inform best use of influenza vaccination in COPD, and guide the use of conjugate vaccines to improve immunity to Haemophilus in Indigenous children. He contributed to Clinical Practice Guidelines for the use of omalizumab and mepolizumab in Australia and he was part of the working group that prepared a web-based Severe Asthma Toolkit for the Severe Asthma CRE.
Works
Search Professor John Upham’s works on UQ eSpace
2014
Conference Publication
Anti-Viral Innate Immunity Varies Across Different Asthma Inflammatory Phenotypes
Upham, John W., Carroll, Melanie, Gibson, Peter, Yang, Ian A. and Simpson, Jodie (2014). Anti-Viral Innate Immunity Varies Across Different Asthma Inflammatory Phenotypes. Annual Meeting of the American-Academy-of-Allergy-Asthma-and-Immunology (AAAAI), San Diego Ca, Feb 28-Mar 04, 2014. NEW YORK: MOSBY-ELSEVIER. doi: 10.1016/j.jaci.2013.12.515
2014
Journal Article
Altered sputum granzyme B and granzyme B/proteinase inhibitor-9 in patients with non-eosinophilic asthma
Simpson, Jodie L., Gibson, Peter G., Yang, Ian A., Upham, John, James, Alan, Reynolds, Paul N., Hodge, Sandra and AMAZES Study Research Group (2014). Altered sputum granzyme B and granzyme B/proteinase inhibitor-9 in patients with non-eosinophilic asthma. Respirology, 19 (2), 280-287. doi: 10.1111/resp.12213
2014
Conference Publication
Utilisation of nicotine replacement therapy (NRT) with a hospital pharmacist initiated smoking-cessation intervention
Gupta, Deepali, Upham, John, Winckel, Karl, Burrows, Judith and Ross, Judy (2014). Utilisation of nicotine replacement therapy (NRT) with a hospital pharmacist initiated smoking-cessation intervention. Medicines Management 2014: 40th SHPA Conference, Darwin, Australia, 11-14 September 2014. Barton, ACT, Australia: Kaigi Conferencing and Events.
2014
Conference Publication
Increased Peripheral Blood Pro-Inflammatory/cytotoxic T and Nkt-Like Cells in Indigenous Children with Bronchiectasis
Hodge, G., Upham, J., Chang, A., Gibson, P., Pizzutto, S., Petsky, H. and Hodge, S. (2014). Increased Peripheral Blood Pro-Inflammatory/cytotoxic T and Nkt-Like Cells in Indigenous Children with Bronchiectasis. HOBOKEN: WILEY-BLACKWELL.
2014
Journal Article
The plasmacytoid dendritic cell: a cell at the cross-roads in asthma
Lynch, Jason P., Mazzone, Stuart B., Rogers, Matthew J., Arikkatt, Jaisy J., Loh, Zhixuan, Pritchard, Antonia L., Upham, John W. and Phipps, Simon (2014). The plasmacytoid dendritic cell: a cell at the cross-roads in asthma. European Respiratory Journal, 43 (1), 264-275. doi: 10.1183/09031936.00203412
2014
Conference Publication
Utilisation of nicotine replacement therapy with hospital pharmacist initiated smoking cessation intervention
Gupta, D., Upham, J., Winckel, K., Burrows, J. and Ross, J. (2014). Utilisation of nicotine replacement therapy with hospital pharmacist initiated smoking cessation intervention. Metro South Heath: Allied Health Showcase 2014, Annerley, QLD, Australia, 17 October, 2014.
2014
Journal Article
An immunodiagnostic assay for quantitation of specific EgE to the major pollen allergen component, Pas n 1, of the subtropical Bahia grass
Timbrell, Victoria L., Riebelt, Lindsay, Simmonds, Claire, Solley, Graham, Smith, William B., McLean-Tooke, Andrew, Van Nunen, Sheryl, Smith, Peter K., Upham, John W., Langguth, Daman and Davies, Janet M. (2014). An immunodiagnostic assay for quantitation of specific EgE to the major pollen allergen component, Pas n 1, of the subtropical Bahia grass. International Archives of Allergy and Immunology, 165 (4), 219-228. doi: 10.1159/000369341
2014
Conference Publication
Anti-IL-33 ameliorates asthma onset and progression in response to virus and allergen co-exposure
Lynch, J., Werder, R. B., Simpson, J., Loh, Z., Zhang, V., Sly, P. D., Mazzone, S., Upham, J. W. and Phipps, S. (2014). Anti-IL-33 ameliorates asthma onset and progression in response to virus and allergen co-exposure. Abstracts of the British Society for Immunology Annual Congress, Brighton, United Kingdom, 1–4 December 2014. Chichester, West Sussex United Kingdom: Wiley-Blackwell Publishing.
2014
Journal Article
IRF-3, IRF-7, and IPS-1 promote host defense against acute human metapneumovirus infection in neonatal mice
Spann, Kirsten M., Loh, Zhixuan, Lynch, Jason P., Ullah, Ashik, Zhang, Vivian, Baturcam, Engin, Werder, Rhiannon B., Khajornjiraphan, Natthida, Rudd, Penny, Loo, Yeuh-Ming, Suhrbier, Andreas, Gale Jr., Michael, Upham, John W. and Phipps, Simon (2014). IRF-3, IRF-7, and IPS-1 promote host defense against acute human metapneumovirus infection in neonatal mice. American Journal of Pathology, 184 (6), 1795-1806. doi: 10.1016/j.ajpath.2014.02.026
2014
Conference Publication
Recovery From Acute Asthma Exacerbations in Children: Influence of Viruses, Eczema and Atopy
Teoh, L., Van Asperen, P., Acworth, J., Hurwitz, M., Upham, J., Wang, C., Mackay, I, Sloots, T., Neeman, T. and Chang, A. (2014). Recovery From Acute Asthma Exacerbations in Children: Influence of Viruses, Eczema and Atopy. Annual Scientific Meeting of the Thoracic Society of Australia and New Zealand and the Australian and New Zealand Society of Respiratory Science 2014, Adelaide, SA Australia, 4-9 April 2014. Richmond, VIC Australia: Wiley-Blackwell Publishing Asia. doi: 10.1111/resp.12263_4
2014
Conference Publication
Interleukin-1B Is Related to Clinical Outcomes in Protracted Bacterial Bronchitis
Baines, K., Upham, J., Yerkovich, S., Chang, A., Marchant, J., Carroll, M., Simpson, J. and Gibson, P. (2014). Interleukin-1B Is Related to Clinical Outcomes in Protracted Bacterial Bronchitis. Thoracic Society of Australia & New Zealand and the Australian & New Zealand Society of Respiratory Science 2014 Annual Scientific Meetings, Adelaide, SA Australia, 4‐9 April 2014. Richmond, VIC Australia: Wiley-Blackwell Publishing Asia.
2014
Journal Article
Environmental exposures and innate immunity in the lung
Georas, Steve N. and Upham, John (2014). Environmental exposures and innate immunity in the lung. Journal of Environmental Immunology and Toxicology, 2 (1), 1-3. doi: 10.7178/jeit.25
2014
Conference Publication
Critical role for IL-33 in the onset and progression of experimental asthma induced by concomitant virus infection and allergen exposure
Werder, Rhiannon B., Lynch, Jason P., Simpson, Jennifer, Loh, Ken, Zhang, Vivian, Spann, Kirsten, Sly, Peter D., Mazzone, Stuart, Upham, John W. and Phipps, Simon (2014). Critical role for IL-33 in the onset and progression of experimental asthma induced by concomitant virus infection and allergen exposure. 2nd Annual Meeting of the International-Cytokine-and-Interferon-Society (ICIS), Melbourne, VIC, Australia, October 26 - 29, 2014. London, United Kingdom: Academic Press. doi: 10.1016/j.cyto.2014.07.203
2013
Journal Article
Clinical factors associated with the humoral immune response to influenza vaccination in chronic obstructive pulmonary disease
Nath, K.D., Burel, J.G., Shankar, V., Pritchard, A.L., Towers, M., Looke, D., Davies, J.M. and Upham, J.W. (2013). Clinical factors associated with the humoral immune response to influenza vaccination in chronic obstructive pulmonary disease. International Journal of COPD, 9 (1), 51-56. doi: 10.2147/COPD.S53590
2013
Conference Publication
NON-TYPEABLE H. INFLUENZAE-SPECIFIC IMMUNE RESPONSES IN CHILDREN WITH CHRONIC SUPPURATIVE LUNG DISEASE
Pizzutto, Susan J., Yerkovich, Stephanie T., Hales, Belinda J., Thomas, Wayne R., Upham, John W. and Chang, Anne B. (2013). NON-TYPEABLE H. INFLUENZAE-SPECIFIC IMMUNE RESPONSES IN CHILDREN WITH CHRONIC SUPPURATIVE LUNG DISEASE. HOBOKEN: WILEY-BLACKWELL.
2013
Conference Publication
DETECTION OF CIRCULATING TUMOUR CELLS IN ADVANCED NON-SMALL CELL LUNG CANCER
Fanning, Michael, Lehman, Margot, Mai, Tao, Horwood, Keith, Murphy, Michelle, Mccafferey, Elizabeth, Jovanovic, Lidija and Upham, John (2013). DETECTION OF CIRCULATING TUMOUR CELLS IN ADVANCED NON-SMALL CELL LUNG CANCER. PHILADELPHIA: LIPPINCOTT WILLIAMS & WILKINS.
2013
Journal Article
Influenza epidemiology, vaccine coverage and vaccine effectiveness in sentinel Australian hospitals in 2012: the Influenza Complications Alert Network (FluCAN)
Cheng, Allen C, Brown, Simon, Waterer, Grant, Holmes, Mark, Senenayake, Sanjaya, Friedman, N Deborah, Hewagama, Saliya, Simpson, Graham, Wark, Peter, Upham, John, Korman, Tony, Dwyer, Dominic, Wood-Baker, Richard, Irving, Louis, Bowler, Simon, Kotsimbos, Tom and Kelly, Paul (2013). Influenza epidemiology, vaccine coverage and vaccine effectiveness in sentinel Australian hospitals in 2012: the Influenza Complications Alert Network (FluCAN). Communicable Diseases Intelligence Quarterly Report, 37 (3), E246-E252.
2013
Conference Publication
Children with chronic suppurative lung disease have a Th2 polarised immune response to H. influenzae
Pizzutto, Susan, Yerkovich, Stephanie, Hales, Belinda, Thomas, Wayne, Upham, John and Chang, Anne (2013). Children with chronic suppurative lung disease have a Th2 polarised immune response to H. influenzae. SHEFFIELD: EUROPEAN RESPIRATORY SOC JOURNALS LTD.
2013
Journal Article
Influenza epidemiology, vaccine coverage and vaccine effectiveness in sentinel Australian hospitals in 2012: the Influenza Complications Alert Network (FluCAN)
Cheng, Allen C., Brown, Simon, Waterer, Grant, Holmes, Mark, Senenayake, Sanjaya, Friedman, N Deborah, Hewagama, Saliya, Simpson, Graham, Wark, Peter, Upham, John, Korman, Tony, Dwyer, Dominic, Wood-Baker, Richard, Irving, Louis, Bowler, Simon, Kotsimbos, Tom and Kelly, Paul (2013). Influenza epidemiology, vaccine coverage and vaccine effectiveness in sentinel Australian hospitals in 2012: the Influenza Complications Alert Network (FluCAN). Communicable Diseases Intelligence Quarterly Report, 37 (3), E246-E252.
2013
Journal Article
Influenza Vaccine Effectiveness against Hospitalisation with Confirmed Influenza in the 2010-11 Seasons: A Test-negative Observational Study
Cheng, Allen C., Holmes, Mark, Irving, Louis B., Brown, Simon G. A., Waterer, Grant W., Korman, Tony M., Friedman, N. Deborah, Senanayake, Sanjaya, Dwyer, Dominic E., Brady, Stephen, Simpson, Grahame, Wood-Baker, Richard, Upham, John, Paterson, David, Jenkins, Christine, Wark, Peter, Kelly, Paul M. and Kotsimbos, Tom (2013). Influenza Vaccine Effectiveness against Hospitalisation with Confirmed Influenza in the 2010-11 Seasons: A Test-negative Observational Study. Plos One, 8 (7) e68760, e68760.1-e68760.7. doi: 10.1371/journal.pone.0068760
Funding
Past funding
Supervision
Availability
- Honorary Professor John Upham is:
- Available for supervision
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Available projects
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Immune dysregulation in asthma and host defence against respiratory viruses
Our program of translational research is focussed on the study of immune function and dysfunction in asthma, and host defence against respiratory viruses, especially human rhinoviruses. We are interested in the mechanisms leading to excessive airway inflammation in asthma, and why people with asthma are unusually susceptible to asthma attacks during respiratory viral infections. Our aim is to discover new therapeutic targets in severe asthma.
Research Projects
- The function of key immune cells such as antigen presenting cells and NK cells
- The role of polarizing cytokines such as IL-33, IL-25 and TSLP in altering host defence against viruses.
- How macrolide antibiotics alter immune function
Supervision history
Current supervision
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Doctor Philosophy
Transmission dynamics of multi-drug resistant tuberculosis amongst immune suppressed patients exposed to an infectious case
Associate Advisor
Other advisors: Professor Antje Blumenthal, Professor Rachel Thomson
Completed supervision
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2023
Doctor Philosophy
Advancing management of pulmonary thromboembolic disease: from acute pulmonary embolism to pulmonary hypertension
Principal Advisor
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2023
Doctor Philosophy
Using proteomics to understand and prevent asthma exacerbations with macrolide antibiotics
Principal Advisor
Other advisors: Professor Ian Yang
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2021
Doctor Philosophy
Role of Regulatory T cells in modulating antiviral immune responses to rhinovirus: relevance to asthma
Principal Advisor
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2019
Doctor Philosophy
The impact of asthma, toll-like receptors 7 and 8, genetic and clinical determinants on antiviral immune response
Principal Advisor
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2020
Doctor Philosophy
The influence of maternal diet on microbiome assembly and severity of viral bronchiolitis in the offspring
Associate Advisor
Other advisors: Associate Professor Paul Dennis
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2019
Doctor Philosophy
The role of necroptosis in the development of severe bronchiolitis and subsequent asthma
Associate Advisor
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2018
Doctor Philosophy
The role of the interleukin-6 pathway in asthma
Associate Advisor
Other advisors: Professor Nick Martin
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2017
Doctor Philosophy
A critical contribution of the airway epithelium to the pathogenesis of viral bronchiolitis and asthma
Associate Advisor
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2016
Doctor Philosophy
The role of interferon regulatory factor 3 and 7 in virus-induced bronchiolitis and the onset of asthma.
Associate Advisor
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2016
Doctor Philosophy
Understanding the cellular and molecular processes that link RAGE gene-deletion with the development of pneumovirus-induced bronchiolitis and paucigranulocytic asthma
Associate Advisor
Other advisors: Professor Peter Sly
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2015
Doctor Philosophy
The plasmacytoid dendritic cell: a cell at the cross-roads in asthma
Associate Advisor
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2015
Doctor Philosophy
Chronic wet cough in children and further exploration of protracted bacterial bronchitis
Associate Advisor
Media
Enquiries
Contact Honorary Professor John Upham directly for media enquiries about:
- Allergies
- Asthma
- Chronic obstructive pulmonary disease
- Dendritic cells
- Immunity
- Lung infections
- Lungs - virus infections
- Virus infections of the lung
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